Spiroplasma syrphidicola: SSYRP_v1c00100
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Entry
SSYRP_v1c00100 CDS
T02677
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ssyr
Spiroplasma syrphidicola
Pathway
ssyr03030
DNA replication
ssyr03430
Mismatch repair
ssyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSYRP_v1c00100 (holB)
03430 Mismatch repair
SSYRP_v1c00100 (holB)
03440 Homologous recombination
SSYRP_v1c00100 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssyr03032
]
SSYRP_v1c00100 (holB)
03400 DNA repair and recombination proteins [BR:
ssyr03400
]
SSYRP_v1c00100 (holB)
Enzymes [BR:
ssyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SSYRP_v1c00100 (holB)
DNA replication proteins [BR:
ssyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SSYRP_v1c00100 (holB)
DNA repair and recombination proteins [BR:
ssyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SSYRP_v1c00100 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DUF4547
Motif
Other DBs
NCBI-GeneID:
16152649
NCBI-ProteinID:
AGM25606
UniProt:
R4UJX1
LinkDB
All DBs
Position
12775..13614
Genome browser
AA seq
279 aa
AA seq
DB search
MDNLFTEQDFKKINFLKAQVKSNSFPNQLLIINNDIDKLNQFANLLARFLVCQNNLELNC
SCNNCQRINNNTFYDLKVCGDYLSAIKKDEIQEIIASFQYSALEANGKKIYIIRGAELMT
PEAANSLLKFLEEPSETTYAILLTKNKNKVLDTIKSRCLNLILNNVMAKQTIEDFKKEFV
INFFNSLENNKENIFILVRELFGYSNLDNQEILFLIGNVIKNSAWQEYHLSSQQLIMRLE
SKKNKLIEICFAMGNLLTDNLNKELVLEKAMIDFYNEVA
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggataacctgtttactgaacaagattttaaaaaaattaattttttaaaagcgcaagtt
aaaagtaattcttttcctaatcaactattaattattaataatgatattgataaattaaat
cagtttgccaatttgctggcacgctttttagtatgtcaaaacaatctagaacttaattgt
tcatgtaataattgtcaaagaattaataataatactttttatgatttaaaagtttgtgga
gattatttaagtgcaattaaaaaagatgaaattcaagaaattattgctagttttcaatat
tcagctttagaggcaaatgggaaaaagatttacattattcgtggagctgaattaatgacc
ccagaagctgctaattccctactaaaatttttagaggagccatcagaaacaacatatgcg
attttattaacaaaaaataaaaataaagtattggacacaattaaatcacgttgcttaaat
ttaatcttgaataatgttatggcaaagcaaacaattgaagattttaaaaaagaatttgtt
atcaacttttttaatagtttagaaaacaataaagaaaatatttttattttagttcgtgaa
ttatttggatatagtaatcttgataatcaagaaattctctttttgattggtaatgttatt
aaaaatagcgcatggcaagaatatcatcttagcagccaacaattgattatgaggttagaa
agtaaaaaaaacaaattaattgaaatttgttttgcgatgggtaatttattaacagataac
ttaaataaagaattagttctagaaaaagcgatgattgatttttataatgaggtggcttaa
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