Serratia symbiotica: SCc_722
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Entry
SCc_722 CDS
T01672
Symbol
rpoB
Name
(GenBank) RNA polymerase, b subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssz
Serratia symbiotica
Pathway
ssz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCc_722 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssz03021
]
SCc_722 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssz03400
]
SCc_722 (rpoB)
Enzymes [BR:
ssz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCc_722 (rpoB)
Transcription machinery [BR:
ssz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCc_722 (rpoB)
DNA repair and recombination proteins [BR:
ssz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCc_722 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF1350
Motif
Other DBs
NCBI-ProteinID:
AEW44828
LinkDB
All DBs
Position
complement(1646401..1650462)
Genome browser
AA seq
1353 aa
AA seq
DB search
MVRLSSELRNPMVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIDQDPEGRYGL
EAAFRSVFPIQSYSGNAELQYVSYRLGDPVFDVKECQIRGITFSAPLRVKLRLVIYEREA
PEGTVKDIKEQVVYMGEIPIMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK
VLYNARIIPYRGSWLDFEFDPKDHLFVRIDRRRKLPATIILRALHYTTEQILDLFFDAIT
FELHDNKLQMELVPERLRGETAAFDLEANGKIYVEKGRRITARHIRQLEKDKIYSIRVPV
EYIIGKVVSQDYIDTNTGELICAANTELSLDLLTKLNQAGYKSISTLFTNDLDHGAYISE
TLRIDPSVDRLSALVEIYRMMRPGEPPTRDAAEGLFENMFFSEERYDLSAVGRMKFNRSL
LRKNIEGLGILSKNDIIDVIKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV
RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR
ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET
PYRRVRDRLVTDEINYLSAIEEGNFVIAQANSNLDENGRFVEDLITCRSKGESSLFSCDQ
VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA
VDSGVTVVAKRGGIIQYVDASRIIIKVNENEMHPGEAGIDIYNLTKYTRSNQNTCINQMP
CVNLDEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT
TIHIQELACISRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP
KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIE
EMQLKQAKKDLTEELQILEAGLFTRIHAVLVAGGINVDKLSTLPRKLWLTISLSEEKRQN
QLEQLVGQYDELKSDFEKKIEVKRRKITQGDDLAPGVLKIIKVYLAVKRQIQPGDKMAGR
HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKIN
QMLQQQQEVIKLREFIQKAYDLGDDICQKVNLNDFTDDEVLRLAENLKYGMPIATPVFDG
AKETEIKQLLEISGIPTSGQITLYDGCTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTD
SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDINGRTKMYKNIV
DGDHRMEPGMPESFNVLLKEIRSLGINIELEDE
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
gtggttcgactttccagcgagctgaggaatcctatggtttactcctataccgagaaaaaa
cgtattcgtaaggattttggtaagcgtccacaagttctggacataccctatctcctttct
atccagcttgattcgttccagaaatttatagatcaagatccagaggggcggtacggctta
gaagctgcctttcgttctgtttttcctattcaaagttatagtggcaatgcggagctgcaa
tatgttagctatcgtcttggtgatccggtgtttgatgttaaagaatgccagattcgtggc
ataacgttttctgcgcctctacgtgtaaaactccgtttagtaatttatgagcgtgaagct
ccagaaggaacagttaaggatataaaagagcaagtagtttatatgggtgaaataccgatt
atgactgaaaatggtacctttgtgattaatggtactgagcgagtgattgtctctcagttg
catcgtagtcctggtgtattttttgatagtgataagggcaaaactcactcatccggtaaa
gtattgtataatgcacgtattattccttaccgtggttcatggttagattttgagtttgat
ccaaaagatcacttatttgtgcgtatcgatcgtcgccgcaagttaccagcaacgattatt
ttgcgtgcgttacattacaccacagaacagatactcgacttgttctttgatgctattact
tttgaactgcatgataataagttacagatggagttagtgccagagcgtttacgtggtgaa
actgctgcttttgatcttgaggctaatggtaaaatttacgtagagaaaggtcgtcgcatt
actgctcgacatattcgtcagcttgaaaaagataaaatttatagtattcgagtaccggtt
gaatacatcataggaaaggtagtttcacaggattatattgacaccaataccggtgaacta
atctgtgctgctaatacggagttatcattagatttgttaactaaattaaatcaagctgga
tataaatctatctcaaccttattcactaatgacttagatcatggcgcttatatttctgag
actctacgcattgatcctagtgttgatcgtttaagcgcattagtagaaatttaccgcatg
atgcgccctggtgagcctccaacacgtgacgcagccgaaggtctgtttgaaaatatgttc
ttttctgaagaacgttatgatttatctgcggttggtcgtatgaagtttaatcgctcctta
cttcgtaagaatatagaaggtttgggtattttgagtaaaaatgacatcattgatgtgatt
aagaagcttatagatatccgtaatggtaaaggtgaagtagatgatattgaccacttaggt
aaccgtcgtattcgttctgttggtgaaatggctgagaatcaatttcgtgttggtcttgta
cgtgttgagcgcgcagtgaaggagcgtctatctttgggggaccttgatacccttatgcct
caagatatgattaatgctaagccgatttcagcggctgtaaaagagttttttgggtccagc
cagttatctcaatttatggatcaaaataatccattatctgagattacgcataagcgccgt
atctcagcattaggtccaggaggcctaactcgcgaacgtgcggggtttgaagtgcgagat
gttcatccgactcactatggtcgtgtatgtcctattgaaacaccagaaggaccaaatata
ggtttaattaactcattgtctgtatatgcacaaactaatgagtatggtttcttagagact
ccttatcgacgcgtacgtgatcgcttggtaacagatgaaattaattacctgtctgctatt
gaagagggtaattttgttattgctcaagcaaactccaatctagatgagaatggtcgcttt
gtagaagatctgattacttgtcgtagcaagggtgaatcaagcctgtttagttgtgatcaa
gtcgactatatggacgtatctactcaacaagttgtatctgttggagcttcacttattccc
tttcttgagcatgatgatgctaatcgcgcattaatgggtgcaaatatgcagcgtcaggcg
gtaccaactttacgagcagataagccactagttggtaccggtatggagcgcgctgtagca
gttgattctggtgttactgttgtagctaaacgtggtggtataattcagtatgtagatgcg
tcccggataattattaaagttaatgaaaacgagatgcaccccggagaagcgggtattgat
atttataatctaaccaaatacacgcgttctaatcagaatacttgtattaaccagatgccg
tgcgtgaatttggatgagccaattgagcgtggtgatgtgttagcagacggcccatctaca
gatcttggcgaattagctttgggtcaaaatatgcgcgttgcatttatgccatggaatggt
tacaacttcgaagattctattttagtctctgagcgtgtagtacaagaggatcgttttacc
accatccatattcaggagctagcatgtatatctcgtgatacaaaattagggcctgaagaa
attactgccgatattcctaacgtaggtgaagctgcgctctctaagttagatgaatctgga
attgtttatatcggcgctgaagtaaccggtggtgatattctagtggggaaagtaacgcca
aagggtgaaactcaattaactcctgaagagaagttactgcgtgcaatttttggggaaaaa
gcctctgatgttaaagactcttcactacgtgtccctaatggtgtctcaggtactatcata
gatgtacaagtttttactcgtgatggtgtggagaaagataaacgagcgttagaaattgaa
gagatgcagctgaagcaagcgaagaaagatcttaccgaagaattacaaatattggaagca
ggattatttactcgtattcacgccgtattagtagccgggggaattaatgttgataaatta
agtactttaccacgtaagctttggttaacaatcagcttaagcgaggaaaagaggcaaaat
caactagagcaattagtaggtcaatatgatgaactgaaatcagatttcgagaaaaagatc
gaggttaagcgtcgcaaaattactcagggtgatgatttagcgcctggcgtgttaaagatt
attaaagtttatttagcagttaaacgtcagattcagccaggtgataagatggcgggtcgt
catggtaataaaggtgtgatatcgaagattaaccctattgaggatatgccttatgatgaa
aacggcactcctgtagacatcgttctcaatccattaggcgtaccatcacgtatgaatatt
ggccaaatcttggaaacacacctaggcatggctgcaaaaggtattggtgaaaagatcaat
caaatgcttcaacagcaacaagaggttattaaattacgtgagtttattcagaaggcctat
gatcttggcgatgatatttgtcaaaaagtgaacttaaatgattttactgacgatgaagta
ttgcgtctggcggagaacttaaaatacggtatgccaattgcaactccagtgtttgatggc
gcaaaagagacagaaataaaacaactgttagaaataagtgggatcccaacatcaggtcag
attacattatacgacggctgtactggcgagcaatttgagcgccaggtgactgttggttat
atgtatatgttaaaattaaatcatttagttgatgataaaatgcatgctcgttcaactgac
tcttatagcttagtgactcagcagccgctaggtggtaaagcgcagtttggtggccaacgt
tttggtgaaatggaagtatgggcactagaagcttacggtgcagcttatactctacaagag
atgcttactgttaagtcagatgatattaatggccgcactaagatgtataaaaatattgtt
gatggcgatcatcgtatggaaccaggtatgccggaatcttttaatgtattgttaaaggaa
attcgctcgcttggtattaatattgaactcgaagatgagtaa
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integrated database retrieval system
