Streptomyces tanashiensis: LDH80_23850
Help
Entry
LDH80_23850 CDS
T08718
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
staa
Streptomyces tanashiensis
Pathway
staa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
staa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LDH80_23850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
staa03400
]
LDH80_23850 (mfd)
Enzymes [BR:
staa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDH80_23850 (mfd)
DNA repair and recombination proteins [BR:
staa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LDH80_23850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UZX23562
LinkDB
All DBs
Position
5241649..5245182
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDVVVKDAALAEAVKAAGDGNRPHVDLVGPAAARPFAVAALARDSGRPVLAVTA
TGREAEDLAAALRSLLDPDTVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRDDDP
AAGPVSVVVAPIRSVLQPQVKGLGDLEPVALRSGQTADLNEVVEGLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERAAALAEEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPEGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRARELGMA
WWSVSPFAADAADADGDTLTLGMRAPESYRGDTARALADTKGWLADGWRTVYVTEAHGPA
SRTVEVLGGEGIAARLDADLAEISPSVVHVSTGSIDYGFVDPALRLAVLTETDLSGQKAA
GKDGQRMPAKRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYS
ARMAAPGHAFGPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFGERYSQFPVKVRALSRFQTETESK
ATLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVF
YIHNRVDSIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGG
VEEEAPLEVKIELPVDAHMPHDYAPGERLRLQAYRSIASANSEEDIRAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPRSVIKPAV
HQILVPRPTSGKIGGKPVVGRELLAWTGEFLTTILGG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgatgtcgtcgtcaaggacgccgccctcgccgaggcggtg
aaggccgccggtgacgggaaccgcccgcacgtggacctggtcgggccggcggccgcgcgg
ccgttcgccgtggccgcgctcgcccgggactcggggcggccggtgctcgcggtgaccgcg
accggccgggaggccgaggacctggccgccgcgctgcggtcgctcctggacccggacacg
gtcgccgagtacccctcctgggagaccctgccgcacgagcggctctcgccccggtccgac
accgtcggccgccggctcgccgtgctgcggcggctggcgcaccccagggacgacgatccc
gccgccggtcccgtcagcgtggtcgtcgcgcccatccgttccgtgctccagccgcaggtc
aagggtctcggggacctggagcccgtggcgttgaggagtgggcagaccgccgacctgaac
gaggtcgtcgagggcctcgcggccgccgcgtactcccgggtggagctggtcgagaagcgc
ggcgagttcgcggtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccg
ctccggatcgagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcggtccctggaggtcgccgagcacggtctgtgggcgccgccctgccgtgagctgctg
ctgaccgacgaggtgcgggagcgggcggcggcgctcgccgaggagcacccggagctgggc
gagctgctcaacaagatcgccgaggggatcgcggtggagggcatggagtccctcgcgccg
gtcctcgtcgacgacatggagctgctgctcgacgtgctgcccgagggcgccatggccgtc
gtctgcgaccccgagcgggtgcggacccgggccgccgatctggtggccaccagtcaggag
ttcctgcaggcctcctgggccgccacggccggcggcggcgaggctccgatcgacgtcggc
gcggcctcgctgtgggggatcgcggacgtgcgggaccgggcgcgcgagctgggcatggcc
tggtggtcggtgtcgccgttcgcggcggacgcggccgacgccgacggggacaccctgacg
ctcggcatgcgggccccggagtcgtaccgcggcgacacggcccgggcgctcgccgacacc
aagggctggctggccgacggctggcggacggtgtacgtgacggaggcccacggcccggcg
tcccgtacggtcgaggtcctcggcggcgaaggcatcgccgcccgcctcgacgcggacctg
gcggagatctccccgtccgtggtgcacgtgtcgaccggttccatcgactacggcttcgtc
gacccggcgctccggctggccgtgctcacggagaccgacctgtccggccagaaggcggcg
ggcaaggacggccagcggatgccggccaagcgccgcaagacgatcgacccgctgaccctg
gaggtcggcgactacatcgtgcacgagcagcacggtgtcggccggtacgtcgagatggtc
cagcggaccgttcagggcgcgacccgcgagtacctcctcgtggagtacgcgccggcgaag
cgcggccagcccggtgaccggctgtacatcccgaccgaccagctggagcaggtcacgaag
tacgtgggcggcgaggcgccgaccctgcaccggctcggcggcgcggactggacgaagacg
aagcagcgggcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctgtactcg
gcccggatggcggctcccggtcacgccttcggcccggacacgccgtggcagcgggagctg
gaggacgccttcccgtacgcggagacgcccgatcagctgtccaccatcgccgaggtgaag
gaggacatggagaagacggttccgatggaccgtctgatctgcggcgacgtcggttacggc
aagacggagatcgcggtgcgggcggccttcaaggccgtgcaggacggcaagcaggtcgcg
gtcctggtgccgacgacgctgctcgtgcagcagcatttcggcacgttcggcgagcggtac
tcgcagttcccggtgaaggtgcgggcgctgtcccggttccagacggagaccgagtcgaag
gcgaccctggaggggctgcgggagggctcggtcgacgtcgtcatcggcacccaccgcctc
ttctcctcggagacgaagttcaaggacctgggtctggtcatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctgaagaagctccgggcgaacgtcgacgtcctgacg
atgtcggccaccccgattccgcgaacccttgagatggcggtgacgggcatccgcgagatg
tcgacgatcaccacgccgccggaggagcggcacccggtcctcaccttcgtcggtccgtac
gaggagaagcagatcggcgccgcgatccggcgggaactcctgcgcgagggacaggtcttc
tacatccacaaccgggtcgactcgatcgaccgggccgccgcccggctccgtgagatcgtc
cccgaggcgcggatcgccacggcccacgggcagatgagcgagagcgccctggagcaggtc
gtggtcgacttctgggagaagaagttcgacgtgctggtgtcgacgacgatcgtcgagtcc
ggcatcgacatctccaacgcgaacaccctgatcgtcgagcggggcgacaacttcggcctg
agccagctccaccagctgcgcggccgggtgggacggggcagggagcggggttacgcgtac
ttcctctacccgccggagaagccgctcacggagaccgcgcacgagcggctcgcgacgatc
gcccagcacaccgagatgggcgccggcatgtacgtcgcgatgaaggacctggagatccgc
ggcgcgggcaatctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgac
ctgtacgtgcggatggtcggcgaggccgtcgccgactaccgggcgcagatggagggcggt
gtcgaggaggaggccccgctggaggtgaagatcgagcttccggtcgacgcccacatgccg
cacgactacgcgccgggggagcggctgcggctccaggcctaccgttcgatcgcctccgcg
aactcggaggaggacatcagggcggtgcgcgaggagctcaccgaccgctacggcaagctt
cccgagccggtggagaacctgctgctggtcgcgggcctgcggatgctggcgcgggcgtgc
ggggtcggcgagatcgtcctccagggctccaacatccgtttcgcgccggtggagctgcgg
gagtcgcaggagctgaggctcaagcgcctccacccgcgctcggtgatcaagccggcggtc
caccagatcctggtgccgcgcccgacgagcggcaagatcggcgggaagccggtggtgggc
cgtgaactcctcgcgtggacgggtgagttcctgacgacgatcctcgggggctga
DBGET
integrated database retrieval system
