Stanieria sp. NIES-3757: STA3757_41900
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Entry
STA3757_41900 CDS
T05130
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stan
Stanieria sp. NIES-3757
Pathway
stan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STA3757_41900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stan03400
]
STA3757_41900
Enzymes [BR:
stan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STA3757_41900
DNA repair and recombination proteins [BR:
stan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
STA3757_41900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAU66784
UniProt:
A0A140KBQ7
LinkDB
All DBs
Position
4619691..4623230
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AA seq
1179 aa
AA seq
DB search
MAFSSVVRAITKSNLTKELLSKLSQTKSLLINGVPRLPKGIVASSLAQAEGNNLLVVCPT
LEEAGRWATQLEAMGWQTVNFYPTSEASPYDPFDPESEMIWGQMQVLSVIGRRQGIALPV
QGEINTKNGNFAIVTTERSLQPHLPPPEVFQAYCLTLHQGMSLESKELDRSLARLGYERV
SLVETEGQWSRRGDIVDIFPVSAELPVRLELFGDELEKIKEFDAATQRSLDQIEQLLLTP
TSFATIIANTILEAGKSLNSYLSAEEIEGLNQGILPEGMRRFLGVAFAHPSSLLDYLPHN
TLIAIDEIEQCQAHSDRWIKDVEEDWQDSNKLSKIHCVFANCLANIQEFTCLYLSEIAEE
HPRLPVANWETIPVINLYSRPLPTIPHQFGKLAAILRGKKEIYSGITLEKYKTWLISAQP
TRSVSLLQEHDCPAQFIPNPRDYPAIEKLQIQDTAVALQYSGLAELEGFILPTYRIVIVT
DREFFGQHTLATASYIRKRRRAASKQVDLNKLNPGDFVVHKHHGIGKFINLETILHREYV
TIQYADGLLRIPTDSLDLISRFRQVGNRPPVLNKMADKGWTRTKNQVRKTVKKLAVDLLK
LYAKRAKLTGHAYPGDNPWQQELEDSFPYQPTPDQLKAIQDVKLDLESDRPMDRLVCGDV
GFGKTEVAIRAIFKVVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTN
SEKKEIMQRLATGELDVVVGTHQLLGKEVGFKNLGLLVIDEEQRFGVNQKEKIKEFKTLV
DVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVVRTAIRNELDRG
GQIFYVVPRVEGIEEVASQIREMIPGIRIAIAHGQMPESELESTMITFSNGEADLLVCTT
IIESGLDIPRVNTIIVEDSQKFGLSQLYQLRGRVGRAGIQAHAWLLYPNKQTLSEPARKR
LRALQEFSQLGSGYQLATRDMEIRGVGSLLGAEQSGQMTAIGFDLYMEMLQESIKEIQGQ
EIPQIDDTQIDLNLTAFIPADYIADLEQKMSAYRAVAASSSKTELKQIEAEWRDRYGEIP
PAARQLIQIMELKQIAKSIGFSRIKAEGQQNLVLETPMAEPAWKLLEEKLPEHLRSRFVY
APKKVIVRGLGIVKPQRQLETLIEWLGMMQNAISETETV
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctgttgttcgcgccatcactaagtctaatctgactaaagaattatta
tcgaagcttagtcaaaccaagtctttattgattaatggtgttcctcgccttcctaaaggg
attgttgcgtctagtttggcacaagcagaaggcaataatttgttagtcgtttgtccgact
ttggaagaggcagggcgttgggcaacgcaattggaagcaatgggatggcagacggttaat
ttttatccgacttcagaagcttctccttacgatcccttcgatcctgagtcggagatgatt
tggggacagatgcaggttctttcagttattggtaggaggcaaggcattgctttgcccgta
caaggtgaaataaacacaaaaaatgggaattttgctattgttactacagagcgatcgctt
cagcctcatttaccgccaccagaagtatttcaagcttattgtctaactctacatcaaggg
atgagtttggagtcgaaggaattggatcgatctttggcaagattgggttatgaacgagta
tctctagtagaaacggaaggacaatggagtagaagaggagatattgttgatattttccct
gtttcagcggaattacctgtcagattggaattgtttggcgatgaattagaaaagattaaa
gaatttgatgcagcaacccaacgttctttagatcaaatcgaacaattattgttaacgcct
acttcatttgcgacgattattgctaatactattttagaggcaggaaagagtttaaatagt
tatttatctgctgaagaaattgagggattaaatcaaggtattctgcccgaaggtatgcgt
cgttttttaggagttgcttttgctcatccttcatctttattagattatttacctcacaat
actttaattgcaattgatgaaatagaacaatgtcaagcacatagcgatcgctggattaaa
gatgttgaagaagattggcaggacagtaataagttatcgaaaattcattgtgtgttcgcc
aattgtttagcgaatattcaagaatttacctgtctttatttatcagaaatagcagaagaa
catccaagattacctgtagctaattgggaaacaattcctgttattaatctttatagtcgt
ccgctgccaactataccccatcaatttggaaaattagcagcaattttaaggggaaaaaaa
gaaatttatagtggaattactttagaaaaatataaaacttggttgatttctgcccaacca
actcgttcagtttctttattacaagaacacgattgtcctgcccaatttattcccaatcct
cgtgattatccagccattgaaaagttacagattcaagatacggccgttgctttacaatat
tcgggtttagcagaattagaagggtttattttacctacttatagaattgtcattgttact
gaccgcgaattttttggacagcatactttagctacggctagttatattcgcaagcgtcgt
cgggctgcttctaaacaagtagatttaaataaattaaatccaggagattttgttgtccac
aaacatcatggcattgggaaatttattaacttagaaacgatcttgcatcgggaatacgtc
accattcaatatgccgatggtttactgagaattcctaccgattctttagatttaatttct
cgttttcgccaggtaggaaaccgtcccccagtcttaaataaaatggcggacaagggatgg
acgagaactaaaaatcaagtccgtaaaactgttaagaaattagcagtagatttattaaaa
ctctatgcgaaaagagcaaaattaacaggtcatgcctaccctggcgataatccttggcaa
caggaattagaagattcttttccctatcaaccaacccccgatcaacttaaagccattcaa
gatgtaaaactagatttagaaagcgatcgccctatggatcgtttagtttgtggtgatgtt
ggttttggtaaaactgaagtagcaatcagggcaatttttaaagtagttactagtggtcat
aaacaggtagctttcttagccccgacgacaattttaactcagcaacactatcacactctc
aaggaaagattcgctccctatccgatcaatattggtttattaaatcgcttccgaactaat
tccgaaaagaaagaaattatgcaacgtctcgctacgggagaattggatgttgtagtggga
actcatcagttattaggtaaagaagttggttttaaaaatttaggtttattagtaattgat
gaagaacagcgttttggggtaaatcaaaaagagaaaatcaaagaatttaaaaccttagta
gatgttttaactctctctgccactccgattccccgtaccctttatatgtctttatcggga
attcgggaaatgagtttgattaccactccacctccttctcgtcgcccgattaaaactcat
ttatctccttataaccctgaagttgtccgtacagctatccgaaacgaattagatcgaggt
ggacaaatcttttatgtcgttcctagagtcgaaggcatagaagaagtagcttctcaaata
cgagaaatgattcctggcatccgaattgcgatcgctcatggacagatgcccgaatcggaa
ttagaatcaaccatgattacttttagtaatggagaagcagatctactggtttgcaccacc
attattgaatcgggtttagatattccccgtgtcaatacaattattgttgaagattcacag
aaattcggtttatcccaactctatcaattaagaggtagagttggacgggcaggaattcag
gcacacgcttggttactctatcccaataaacaaactttatccgagcctgccagaaaaaga
ttacgagccttacaagagtttagtcaattaggttctggttatcaactcgccaccagagac
atggaaattagaggggttggtagtctcttgggtgcagaacaatcaggacaaatgactgcc
attggtttcgatctctatatggagatgttacaagaatcaattaaagaaatccagggacaa
gaaattccccaaattgatgatactcaaatcgatctcaacctcaccgcttttatccctgcc
gattatattgccgatctagaacaaaaaatgtctgcttatcgggcagtagctgcctcttca
tccaaaaccgaattaaaacaaattgaagcggaatggcgcgatcgctatggagaaattccc
cctgctgcccggcaactgatccaaattatggaattaaagcaaattgccaaatcgattggt
ttttcccgtatcaaagccgaaggacaacaaaatctagtcttagaaacaccaatggctgaa
cctgcatggaaactcctcgaagaaaaattacccgaacacttgcgatcgcgttttgtttat
gcaccgaaaaaagtcatcgtgcgcggtttagggatagttaaaccgcaaagacaactagaa
actttgatcgaatggttgggaatgatgcaaaatgctatatcagaaacagaaacggtttag
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integrated database retrieval system
