Starkeya sp. ORNL1: G3545_03090
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Entry
G3545_03090 CDS
T06785
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
star
Starkeya sp. ORNL1
Pathway
star03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
star00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G3545_03090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
star03400
]
G3545_03090 (mfd)
Enzymes [BR:
star01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3545_03090 (mfd)
DNA repair and recombination proteins [BR:
star03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G3545_03090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QJP12735
UniProt:
A0A858WQT3
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All DBs
Position
628637..632158
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AA seq
1173 aa
AA seq
DB search
MKTTTTNLAARLVPGGTVTLANVPSGMHGLAAADLARALAARPDAAWPTLTVICRDAERM
AELERALAFFAPGIEVLPLPAWDCLPYDRASPAGAIVARRMTTLARLARVKGREAGTIVL
TTVNAALQRVPARALVATQSFSAAQGNALSLDEVVGWAEVNGFLRTPTVRDTGEYAVRGG
IVDLFPPGLPAPVRLDFFGDTLDSLRAFDPETQRTTTQMRALDLVPMSELQLTTETMRRF
RMGYVASFGASTKGDPLYEAVSEGRRFPGMEHWLPLFHEKLDTLFDYLEGTPVLIEAQAE
EAAGERLTQIADYYEARREALEHPGQGSGAPYKALKPDALYLTSAEWEAAHKGRALVRLS
PFALPESRDVIDLDGRPARSFATERADPEINLFEAAATYLRELAGKKRTVLAAWSDGSRD
RLATVLADHGLKGTERVGSRDAAETLPKGAIGLAVLGIESGFETDGLVVIGEQDILGDRL
VRPKRKARRPQDIIAELTSLTAGDLVVHVDHGIGRFVGLKTIEAMGAPHDCLEIHYAESS
KLFLPVENLELLSRYGSEDTEAQLDRLGGGGWQARKAKMRSRIREMAAELIKVAAERQLK
EAPRLVPAAGLYDEFRARFPYEETEDQDAAIDSVFDDLGSGHPMDRLICGDVGFGKTEVA
LRAAFAVALNGKQVAVVVPTTLLARQHFKTFSERFKGLPIVVRQASRLVTSKEMSETRKG
LADGTVDIVVGTHALLGKAISFKDLGLVIVDEEQHFGVGHKEKLKQLRAEVHVLTLTATP
IPRTLQLAMTGVRELSIIASPPVDRLAVRTFVTPFDPLIVREALLRERYRGGQSFYVCPR
IEDLGEVKEFLDRNVPEVKVAVAHGQMAASQLEEIMSAFYDGQFDVLLSTTIVESGLDIP
TANTLVIHRADMFGLAQLYQLRGRVGRSKTRAYAIFTLPAEKAITAQAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLEEAIANLKAGITAPVADKW
SPNISIGTPVLIPEDYVADLHVRLGLYRRLADIETDGEIEAIGAELVDRFGEAPVEVDQL
LKLVAIKAMCRRANVEKVDAGPRGAVITFRDAKFPNPGGLVAYLGKPHVIAKVRPDLRIV
FSEDWPDATARLKGTGAILKDLAKIAEQTAKAA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccacgacgaccaatctcgccgcccggctggtgcccggtggcactgtcaccctt
gcgaacgtcccgtccggcatgcacggcctggcagcggcggaccttgcgcgcgcgcttgcg
gcgaggccggatgccgcctggccgacgctcacggtcatttgccgcgacgccgagcgcatg
gccgagctggagcgcgcgctggcgttcttcgcgccgggcatcgaggtgctgccgctcccc
gcctgggactgcctgccttatgaccgcgcctcgccggccggcgcgatcgtcgcgcggcgc
atgacgacgctcgctcggctcgcccgggtgaaggggcgcgaggccggtaccatcgtgctc
acgacggtgaacgccgcgctacagcgggtgccggcgcgtgcgctggtcgcgacgcaatcc
ttctcggcggcgcagggcaatgcgctctcgctcgacgaggtggtcggctgggccgaggtg
aacggcttcctgcgcacgccgacggtgcgcgacaccggcgaatatgcggtgcgcggcggc
attgtcgacctgttcccgccgggcctgccggcgccggtgcggctggatttcttcggcgat
acgctggattcgctgcgcgccttcgatccggaaacgcagcgcaccaccacgcagatgcgc
gcgctcgacctcgtgccgatgagcgagctccagctcaccaccgagaccatgcgccgcttc
cgcatgggctatgtcgccagcttcggagcctccaccaagggcgacccgctctatgaggcg
gtaagcgagggccggcgcttccccggcatggaacattggctgccgctgttccacgagaag
ctcgacacgctgttcgactatcttgagggcacgccggtgctgatcgaggcgcaggccgaa
gaagccgccggcgaacggctgacccagatcgccgattattatgaggcgcggcgcgaggcg
ctggagcatccggggcaggggagcggcgcgccctacaaggcgttgaagcccgacgcgctc
tatctcacttccgcggagtgggaggcggcacacaagggccgcgcgctggtgcggctcagc
ccgttcgcgctgccggaatccagggatgtgatcgatctcgacggccgcccggctcgctcc
ttcgcaacggaacgggccgatcccgagatcaatctgttcgaggcggccgcgacctatctg
cgcgagctggcgggcaagaagcgcactgtgcttgccgcgtggtcggacggctcgcgcgat
cgcctcgccaccgtactcgccgatcacgggctgaagggcaccgagcgggtcggctcgcgc
gatgccgccgagacgctgccgaagggcgccatcggcctcgccgtgctcggcatcgagagt
ggcttcgagaccgatgggcttgtcgtcatcggcgagcaggacattctcggcgaccgcctg
gtgcggccgaagcgcaaggcgcgccgaccgcaggacatcatcgccgagctgacctcgctc
accgccggcgatctcgtcgtccatgtcgaccacggcatcgggcgcttcgtcggcctcaag
actatcgaggcgatgggcgcaccgcacgactgcctcgaaatccactatgcggagagctcg
aagctgttcctgccggtggagaatctcgagctgctgtcgcgctatggctcggaggatacc
gaggcgcagctcgaccggctcggcggtggtgggtggcaggcacgcaaggccaagatgcgc
agccgcatccgcgaaatggcggccgagctcatcaaggtcgcggccgagcgtcagctcaag
gaggcgccgcggctggtgccggcggcagggctctatgacgagttccgcgcccgcttcccc
tatgaggagaccgaggaccaggacgctgccatcgactcggtgttcgacgatctcggctcc
ggccacccgatggatcggctgatctgcggcgatgtcggcttcggcaagacggaggtggcg
ctgcgtgccgccttcgcggtggcactgaacggcaagcaggtcgccgtggtggtgccgacc
acgctgctggcgcgccagcacttcaagaccttctccgagcgcttcaaggggttgcccatc
gtggtccggcaggcctcgcgcctcgtcacctcgaaggaaatgtcggagacccgcaagggc
ctcgccgacggcaccgtcgatatcgtcgtcggcacccatgcgctgctcggcaaggcgatc
tcgttcaaggatctcggcctcgtcatcgtcgacgaggagcagcatttcggcgtcggccac
aaggagaagctgaagcagctgcgcgccgaggtgcatgtgctcacgctcaccgcgacgccg
atcccgcgcacgctccagctcgccatgaccggagtgcgcgagctctccatcatcgcctcg
ccgccggtcgaccgtctcgcggtgcgcaccttcgtcacgccgttcgatccgctgatcgtg
cgcgaagccctgctgcgcgagcgctatcgcggcggccagagcttctatgtctgcccgcgt
atcgaggatctcggcgaggtgaaggagttcctcgaccggaacgtgcccgaagtgaaggtc
gcggtggcccacggccagatggcggcgagccagctcgaagagatcatgtccgccttctat
gacgggcagttcgacgtgctgctctccaccaccatcgtcgagagcgggctcgatatcccg
actgccaacacgctggtgatccaccgcgccgacatgttcggcctcgcccagctctaccag
ctgcgcggccgggtgggtcggtccaagacccgcgcctatgcgatatttactttgccggct
gaaaaggcgatcaccgcacaggcggagcgccggctcaaagtgttgcagtcgctggatacg
ctaggcgccggcttccagctcgccagccatgatctcgatattcgcggcgccggcaacctg
ctcggcgacgaacagtctggccacatcaaggaagtcggctacgaactttaccaggagatg
ctggaggaggcgattgccaacctcaaggccggcatcactgcgccggtcgccgacaaatgg
tcgccgaacatctccatcggtacgccggtgctcatcccggaggattatgtcgccgacctg
cacgtgcggctcggcctctatcgccggctcgccgacatcgagaccgacggcgagatcgag
gccatcggtgccgaactggtggatcgcttcggcgaagcgccggtcgaggtcgaccagttg
ctgaagctcgtcgccatcaaggcgatgtgccggcgcgccaatgtcgagaaggtcgatgcc
ggcccgcgcggggcggtgatcaccttccgcgacgcgaagttcccgaacccgggcggcctc
gtcgcctatctcggcaagccgcacgtcatcgccaaggtgcgaccggacctgaggatcgtg
ttctcggaagactggcccgacgccacggcgcggttgaagggcaccggtgcgatcctgaag
gatttggcgaagatcgcggagcagacggccaaggcggcttag
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