KEGG   Starkeya sp. ORNL1: G3545_03265
Entry
G3545_03265       CDS       T06785                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
star  Starkeya sp. ORNL1
Pathway
star03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:star00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    G3545_03265 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:star03400]
    G3545_03265 (ligD)
Enzymes [BR:star01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G3545_03265 (ligD)
DNA repair and recombination proteins [BR:star03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     G3545_03265 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QJP12764
UniProt: A0A858WX11
LinkDB
Position
complement(669097..671664)
AA seq 855 aa
MALEIYRKKRDFTATPEPKGGRGRKSGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTRG
PSLVAGEKRLAVHVEDHPLEYGGFEGTIPKGEYGGGTVIVWDRGTWTPIGDAHKGYAKGH
LDFELNGEKLHGRWHLVRMHGKPREKRENWLLIKGDDEFARPEEAPDILEERPESVKTGR
EIADVASEEPGWSSKTGEIAKKAASRRKSKAASPSDDAVLEEEKHPPLPDPSTIKGASKA
ALPGFIEPTLASLIASPPRGERWLHEIKFDGYRLQARIEAGRIKLLTRSGLDWTAKFGKP
VVQALQALPVGTALIDGELVVEKDTGASDFSALQADLSEGRSDRFLFYAFDLLYLDGYDL
TALPLIERKRLLEQLIGKDAGIIRYSDHFEEDGDLVLSHACRLSLEGVVSKLRDAPYRSG
RGKSWVKSKCSARQEFVIAGYVPSTTSRQAIGSLILGVYDGDDLVHVGRVGTGFTVPVAE
ELFRRLNRMRIQTSPFAKRLTADEARQARYVRPELVAEVEFRAWTADGHLRHASFRGLRE
DKAARDVVREMPKMAASPAPARRNVKLTHPDRLYWPDDGVTKEGLADYYTEVWPQIAPFI
VGHPLALLRCPSGITGEKFFQKHAWKGINPKVALVRDPKETGEEPLISINDLDGLLALVQ
AATLEIHPWGSTVADWERPDTIIMDLDPGEQVPWETVIAAAGEVRQRLEDAGLAAFVKTS
GGKGLHVVAPLKPKADWTAVKAFTKGIADAMAADTPDRFVSTITKSQRRGKILVDYLRNQ
RGATAVAAYSTRARPGAAVSMPLAWNELNPGIGPAYFTVANTPVRLAALKSDPWEGFRAA
AVPLEQRQGKRRKAA
NT seq 2568 nt   +upstreamnt  +downstreamnt
atggcgctcgaaatctatcgcaagaaacgcgacttcaccgcgacgccggagcccaaaggc
gggcggggacgcaaatccggcaacagcttcgtcatccagaagcatgacgccacgcggctg
cattatgacttccggttggagatggacggcgtgctgaagagctgggccgtcacccgcggc
cccagccttgtagccggcgagaagcgcctcgccgtccatgtcgaggaccatccgctcgaa
tatggcggcttcgaaggcaccattccgaaaggcgaatatggtggcggcaccgtgatcgtg
tgggatcgcggcacctggaccccgatcggcgacgcccataagggctacgccaagggccat
ctcgatttcgagctcaatggcgagaagctccacggccgctggcatctcgtgcgcatgcac
ggcaagccgcgggagaagcgggagaactggctgctgatcaagggcgacgacgaattcgcc
cggccggaggaggcgcccgatattctcgaggaacgcccggaatcagtgaagaccggccgc
gagatcgctgatgtcgctagcgaggaaccgggctggtcctcgaaaaccggcgagatcgcc
aagaaagctgcgtcccgacgcaagtccaaagcggcctcaccgtccgatgacgccgtattg
gaagaggagaagcacccgccccttcccgacccgtcgaccatcaagggagcaagcaaggcc
gccctgcccggtttcattgagccgacgctggcgagcctcatcgcgtctccgccccgcggc
gagcgctggctgcacgagatcaagttcgacggctaccggctgcaggcccgcatcgaggcc
gggcgcatcaagctgctgacccgcagcggcctcgactggacggccaagttcggtaagcct
gtggtacaggcgctgcaagccttgccggtcggcaccgctttgatcgacggcgagctggtg
gtcgagaaggataccggcgcctcggacttctcggccctgcaggccgatctcagcgaaggc
cgcagcgaccggttcctgttctacgctttcgacctgctttacctcgacggctatgacctc
accgccctcccattgatcgaacgcaagagattgctcgaacagcttatcggcaaggatgcc
ggcatcatccgctacagcgaccatttcgaggaggacggcgacttggtgttgagccacgcc
tgccggctgagcctcgaaggcgtggtctcgaagctacgcgatgcgccctaccgctccgga
cgcggcaagagctgggtgaagtcgaaatgctcggcgcggcaggaattcgtcatcgccggc
tatgtgccctcgaccacctcgcgccaggcgatcggctcgctgatcctcggcgtctatgat
ggcgatgacctggtccatgtcggccgcgtcggtacgggtttcaccgtgccggtcgccgag
gaactgttccgccggctcaaccgcatgcggatccagaccagtccctttgcaaagcgccta
accgcggatgaggcccggcaggcgcgctatgtgcgaccggaactggtggcagaggtcgag
ttccgcgcctggaccgccgatggtcatttgcgccatgcctcgttcagagggctgcgtgag
gacaaggccgcacgcgacgtggtgagagagatgccgaagatggcggcctcccctgccccg
gcgcgccgcaacgtgaagcttacccatcccgaccggctttattggcccgatgacggcgtg
accaaggaagggctcgccgactactacaccgaagtctggccgcagatcgcgcctttcatc
gtcggccatccactggcgctgctgcgctgcccgagcggcatcacgggcgagaagttcttc
cagaagcacgcctggaagggcatcaatccaaaggtcgcgctggtccgtgatccgaaggag
accggcgaagagccgctgatcagcatcaatgatctcgacgggctgctcgccctggtgcag
gcggcgacattggagatccatccgtgggggtcgacggtggccgattgggagcggccggac
accatcatcatggaccttgatcccggcgaacaggtgccgtgggagacggtgatcgccgca
gccggagaagtgcgccagcgcctggaagatgccggcctcgccgccttcgtgaagacctcg
ggcggcaagggcctgcacgtcgtcgccccgctgaagcccaaggcggactggaccgcggtg
aaggccttcaccaagggcatcgccgacgccatggccgccgacacgccggaccgcttcgtc
tcgaccatcaccaagtcgcagcgccgcggcaagatactggtcgattatctgcgcaaccag
cgcggcgccacggcggtagcggcctattcgacccgcgcccggccgggcgccgcggtctcg
atgccgctggcctggaatgagctcaaccccggtatcggcccggcctatttcacggtagcc
aatactcccgtccggctcgcggccctgaagtccgatccgtgggagggcttccgcgccgcc
gcggttccgcttgagcaaaggcagggcaagcgcaggaaagcggcatag

DBGET integrated database retrieval system