Starkeya sp. ORNL1: G3545_03265
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Entry
G3545_03265 CDS
T06785
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
star
Starkeya sp. ORNL1
Pathway
star03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
star00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G3545_03265 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
star03400
]
G3545_03265 (ligD)
Enzymes [BR:
star01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G3545_03265 (ligD)
DNA repair and recombination proteins [BR:
star03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G3545_03265 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QJP12764
UniProt:
A0A858WX11
LinkDB
All DBs
Position
complement(669097..671664)
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AA seq
855 aa
AA seq
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MALEIYRKKRDFTATPEPKGGRGRKSGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTRG
PSLVAGEKRLAVHVEDHPLEYGGFEGTIPKGEYGGGTVIVWDRGTWTPIGDAHKGYAKGH
LDFELNGEKLHGRWHLVRMHGKPREKRENWLLIKGDDEFARPEEAPDILEERPESVKTGR
EIADVASEEPGWSSKTGEIAKKAASRRKSKAASPSDDAVLEEEKHPPLPDPSTIKGASKA
ALPGFIEPTLASLIASPPRGERWLHEIKFDGYRLQARIEAGRIKLLTRSGLDWTAKFGKP
VVQALQALPVGTALIDGELVVEKDTGASDFSALQADLSEGRSDRFLFYAFDLLYLDGYDL
TALPLIERKRLLEQLIGKDAGIIRYSDHFEEDGDLVLSHACRLSLEGVVSKLRDAPYRSG
RGKSWVKSKCSARQEFVIAGYVPSTTSRQAIGSLILGVYDGDDLVHVGRVGTGFTVPVAE
ELFRRLNRMRIQTSPFAKRLTADEARQARYVRPELVAEVEFRAWTADGHLRHASFRGLRE
DKAARDVVREMPKMAASPAPARRNVKLTHPDRLYWPDDGVTKEGLADYYTEVWPQIAPFI
VGHPLALLRCPSGITGEKFFQKHAWKGINPKVALVRDPKETGEEPLISINDLDGLLALVQ
AATLEIHPWGSTVADWERPDTIIMDLDPGEQVPWETVIAAAGEVRQRLEDAGLAAFVKTS
GGKGLHVVAPLKPKADWTAVKAFTKGIADAMAADTPDRFVSTITKSQRRGKILVDYLRNQ
RGATAVAAYSTRARPGAAVSMPLAWNELNPGIGPAYFTVANTPVRLAALKSDPWEGFRAA
AVPLEQRQGKRRKAA
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaaatctatcgcaagaaacgcgacttcaccgcgacgccggagcccaaaggc
gggcggggacgcaaatccggcaacagcttcgtcatccagaagcatgacgccacgcggctg
cattatgacttccggttggagatggacggcgtgctgaagagctgggccgtcacccgcggc
cccagccttgtagccggcgagaagcgcctcgccgtccatgtcgaggaccatccgctcgaa
tatggcggcttcgaaggcaccattccgaaaggcgaatatggtggcggcaccgtgatcgtg
tgggatcgcggcacctggaccccgatcggcgacgcccataagggctacgccaagggccat
ctcgatttcgagctcaatggcgagaagctccacggccgctggcatctcgtgcgcatgcac
ggcaagccgcgggagaagcgggagaactggctgctgatcaagggcgacgacgaattcgcc
cggccggaggaggcgcccgatattctcgaggaacgcccggaatcagtgaagaccggccgc
gagatcgctgatgtcgctagcgaggaaccgggctggtcctcgaaaaccggcgagatcgcc
aagaaagctgcgtcccgacgcaagtccaaagcggcctcaccgtccgatgacgccgtattg
gaagaggagaagcacccgccccttcccgacccgtcgaccatcaagggagcaagcaaggcc
gccctgcccggtttcattgagccgacgctggcgagcctcatcgcgtctccgccccgcggc
gagcgctggctgcacgagatcaagttcgacggctaccggctgcaggcccgcatcgaggcc
gggcgcatcaagctgctgacccgcagcggcctcgactggacggccaagttcggtaagcct
gtggtacaggcgctgcaagccttgccggtcggcaccgctttgatcgacggcgagctggtg
gtcgagaaggataccggcgcctcggacttctcggccctgcaggccgatctcagcgaaggc
cgcagcgaccggttcctgttctacgctttcgacctgctttacctcgacggctatgacctc
accgccctcccattgatcgaacgcaagagattgctcgaacagcttatcggcaaggatgcc
ggcatcatccgctacagcgaccatttcgaggaggacggcgacttggtgttgagccacgcc
tgccggctgagcctcgaaggcgtggtctcgaagctacgcgatgcgccctaccgctccgga
cgcggcaagagctgggtgaagtcgaaatgctcggcgcggcaggaattcgtcatcgccggc
tatgtgccctcgaccacctcgcgccaggcgatcggctcgctgatcctcggcgtctatgat
ggcgatgacctggtccatgtcggccgcgtcggtacgggtttcaccgtgccggtcgccgag
gaactgttccgccggctcaaccgcatgcggatccagaccagtccctttgcaaagcgccta
accgcggatgaggcccggcaggcgcgctatgtgcgaccggaactggtggcagaggtcgag
ttccgcgcctggaccgccgatggtcatttgcgccatgcctcgttcagagggctgcgtgag
gacaaggccgcacgcgacgtggtgagagagatgccgaagatggcggcctcccctgccccg
gcgcgccgcaacgtgaagcttacccatcccgaccggctttattggcccgatgacggcgtg
accaaggaagggctcgccgactactacaccgaagtctggccgcagatcgcgcctttcatc
gtcggccatccactggcgctgctgcgctgcccgagcggcatcacgggcgagaagttcttc
cagaagcacgcctggaagggcatcaatccaaaggtcgcgctggtccgtgatccgaaggag
accggcgaagagccgctgatcagcatcaatgatctcgacgggctgctcgccctggtgcag
gcggcgacattggagatccatccgtgggggtcgacggtggccgattgggagcggccggac
accatcatcatggaccttgatcccggcgaacaggtgccgtgggagacggtgatcgccgca
gccggagaagtgcgccagcgcctggaagatgccggcctcgccgccttcgtgaagacctcg
ggcggcaagggcctgcacgtcgtcgccccgctgaagcccaaggcggactggaccgcggtg
aaggccttcaccaagggcatcgccgacgccatggccgccgacacgccggaccgcttcgtc
tcgaccatcaccaagtcgcagcgccgcggcaagatactggtcgattatctgcgcaaccag
cgcggcgccacggcggtagcggcctattcgacccgcgcccggccgggcgccgcggtctcg
atgccgctggcctggaatgagctcaaccccggtatcggcccggcctatttcacggtagcc
aatactcccgtccggctcgcggccctgaagtccgatccgtgggagggcttccgcgccgcc
gcggttccgcttgagcaaaggcagggcaagcgcaggaaagcggcatag
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