Spongiibacter taiwanensis: NCG89_04845
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Entry
NCG89_04845 CDS
T08367
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCG89_04845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
staw03019
]
NCG89_04845
03009 Ribosome biogenesis [BR:
staw03009
]
NCG89_04845
Enzymes [BR:
staw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCG89_04845
Messenger RNA biogenesis [BR:
staw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCG89_04845
Ribosome biogenesis [BR:
staw03009
]
Prokaryotic type
rRNA helicases
NCG89_04845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_22
Flavi_DEAD
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
USA44111
LinkDB
All DBs
Position
complement(1031885..1033768)
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AA seq
627 aa
AA seq
DB search
MSPASESAASGDISFDSLNLRAEVLAAVKAVGYETPSPIQAATIPLLLAGRDVLGQAQTG
TGKTAAFALPVLSCLDVSKRRVQALVLTPTRELAIQVAEAMQTYASKLSGFQVLPIYGGA
DYRGQLQALKRGVQVIVGTPGRVMDHMRRGTLSLDSLSHLVLDEADEMLRMGFIDDVEWI
LSSVPEQRQIALFSATMPPAIRRIANTYLNEPEQVTIQTQTTTAVTIRQRYWLAKGMNKL
DALTRILEAEPFDGMIIFVRTKVQTTELAEKLQARGFAAAPLNGDVAQAQRERTVDQLRS
GKLDILVATDVVARGLDVERVSHVINYDIPNDTEAYVHRVGRTGRAGRSGDAILFVAPRE
KRMLYSIEKATRQSIQEMALPSAENINALRQDRFLQRIQEALQSRHLPAYQSLLADFAQR
EDVAPLDMAAALAILAQDDKPLFLTPEPSRQIADKDVTQRGVPGPVQCYRLEVGRDHGAS
AGNILGAIANETGLTGQAIGRIQLFRDFSTVELPADLGPELLEDLQSVWVAGQALRASVY
EGGAAPDKGHRGKGRKPAHKAGAGKPGYAKGAGGKSPGTKSAARPAGQKKLASKAPASKS
APVKKKKPKSPAGDGFSPVTKAKRRPV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcccctgcttctgaatccgccgcctccggcgacatttcctttgactctttgaatctg
cgcgccgaggtcctggccgccgtcaaagcagtgggatatgaaaccccttcacccatccag
gccgccacgattccgctgttattggcggggcgtgatgttctgggccaagcccagaccggt
accggcaaaaccgctgcttttgcgttgccagtgttgtcctgtctggatgtgtccaaacgg
cgggttcaggccctggtactgacaccgacccgggagctggccattcaggtggccgaggcc
atgcagacctacgccagcaagttgtcgggttttcaggtgctgccgatttatggcggtgcg
gattaccgcggccaattacaggccttaaagcgcggggtgcaggtgattgtgggcaccccc
ggccgggtcatggatcacatgcgtcggggcacattgtccctcgactcgctcagtcatctg
gtgctggatgaggccgatgaaatgctgcgtatggggtttatcgatgacgtggaatggatt
ttgtcgtcggtgccagagcagcgtcagattgccttgttttcggcgacgatgccaccggcc
atccggcggattgccaacacctatttgaatgaacccgagcaggtcaccattcagacccaa
accaccacggcggtcaccattcgccaacgctactggctggccaagggcatgaataagctc
gatgccctgacccgcattctggaggctgagcccttcgatggcatgatcattttcgtgcgc
accaaggtgcagaccaccgagctggcagaaaagctccaggcccgtggctttgccgctgcg
cccctgaacggggatgtggcccaggcccagcgcgagcgcacggtggatcagctgcgctcg
ggcaagctcgatattctggtggccacggatgtggttgcccggggcctggatgtcgagcgg
gtcagccatgtcattaactatgatattcccaacgataccgaggcctacgtgcaccgggtt
ggccgcacgggccgggccggccgctccggggacgcgattctgtttgttgccccccgtgaa
aaacgcatgctgtacagcattgaaaaggccacccgacaaagcattcaggaaatggcgctg
cccagtgctgaaaacattaatgcgctgcgccaggatcgctttctgcagcggattcaggag
gctctgcaatcccggcatctgcccgcctatcaatcgctgctcgccgattttgcccagcgt
gaagatgtggcgccgttggacatggcggcggcgctggcgattctcgcccaggatgacaaa
cccctgtttttaacccctgagccgagccggcagattgccgacaaagatgtcacccagcgc
ggtgtgccaggtcccgtgcagtgctatcgcctggaggttgggcgcgaccacggtgccagt
gccggtaacattcttggcgccattgccaatgagaccggtctgaccggtcaggcgattggt
cgcattcagctgttccgggacttcagcactgttgagctccccgctgacctgggccccgaa
ctgctggaagatctgcaatcggtatgggtggccggacaggcactgcgcgccagcgtttac
gagggcggcgcagccccggacaaaggccatcgcggcaaaggcaggaagccggcccataaa
gccggtgccggcaagccgggttatgccaagggggcaggtggcaagagccccggtaccaag
agtgcagccaggccggctggccagaaaaagttggccagcaaagcgcccgccagcaagagt
gcacctgtgaagaagaaaaagccaaaatccccggccggtgatggttttagtccggtgaca
aaggccaagcgtcgtccggtctaa
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