Sporomusa termitida: SPTER_25070
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Entry
SPTER_25070 CDS
T06115
Symbol
ligD_1
Name
(GenBank) Multifunctional non-homologous end joining DNA repair protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sted
Sporomusa termitida
Pathway
sted03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SPTER_25070 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sted03400
]
SPTER_25070 (ligD_1)
Enzymes [BR:
sted01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SPTER_25070 (ligD_1)
DNA repair and recombination proteins [BR:
sted03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SPTER_25070 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
TetR
Motif
Other DBs
NCBI-ProteinID:
QDR81134
UniProt:
A0A517DUV2
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All DBs
Position
2611394..2612380
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AA seq
328 aa
AA seq
DB search
MPIIKPMLAKPGLLPDEQDKCSFEIKWDGIRALFYLEQNNYKLLSRNLKDITGQYPELHT
LAKEAGSSYTDLILDGEIVAFDSSGLPSFSRLQHRMGLTQAQTIREMMAKVPAHYMIFDI
LLLNGHSLLHKTYSERRALLESLRLDGAHWQTPGYKTGDGREILAASRKLGLEGIIAKRL
DSSYQPGKRSGAWLKIKNQHRQELLICGWVPGQGTRAGTIGALLIGYYDVLPQIAAARGV
PQQLLYAGKAGTGFTLDFLAILSQRLELIKRQTNPFAQDPAVKNAHFVEPVLIGEFEFTE
WTPNHTLRHPSFKGLREDKDPRQVIRED
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgccgataattaaaccgatgctggcaaaacctggtttattgcctgacgaacaagacaaa
tgcagctttgaaatcaaatgggacggtatcagggccctcttctatctggagcaaaacaac
tacaagctgctaagccgcaaccttaaggatataaccggccagtatcccgaattacacaca
ttggctaaagaagcaggcagcagctatactgatctcattctcgacggcgaaattgtggct
tttgattcgtctggcctcccctctttttcccgcctgcagcaccgcatgggactcacccag
gcgcaaacgatccgggaaatgatggcgaaggtgccggcacattatatgatctttgacatt
ttgttgcttaatggccattcgctcctgcataaaacctacagcgagcggcgggctttactg
gaaagcctgcgtctagacggtgctcactggcagacccctggctataaaacaggggacggc
cgtgagatcctggctgccagccgcaaacttggtctggaaggaattatcgccaaacgtctt
gacagcagctatcaaccgggcaaacgcagcggcgcctggctcaaaataaaaaaccagcac
cgccaggaattgctgatctgcggctgggttcccggacagggaacgcgcgccgggacaatt
ggggccttacttattggttattatgacgtcttgccgcaaatcgccgccgccagaggtgtt
ccccagcagttattgtacgccggcaaggccggcacgggttttaccctggatttcctggca
atactaagccagcgtctggaattgataaaaagacaaaccaatccgtttgcccaggatccg
gctgtcaaaaacgctcactttgtcgagccggtcttaatcggcgagtttgaatttacagaa
tggaccccgaatcacaccctgcgccatccgtcttttaaaggtttgagagaagataaagat
cctcgccaggtaattcgcgaagactaa
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