Sporomusa termitida: SPTER_48190
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Entry
SPTER_48190 CDS
T06115
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sted
Sporomusa termitida
Pathway
sted03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPTER_48190 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sted03400
]
SPTER_48190 (mfd)
Enzymes [BR:
sted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPTER_48190 (mfd)
DNA repair and recombination proteins [BR:
sted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPTER_48190 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_16
DUF2007
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDR83335
UniProt:
A0A517E150
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All DBs
Position
5123482..5126787
Genome browser
AA seq
1101 aa
AA seq
DB search
MGEKTILTLFAAFHEDKQLMAAQAAFGAIGNQSVIYGVTGAQKSVLMAAAFQASPRPTII
IAASHEAVEMLRTDFAALLPQVPVVELPAIDMITFAAAAKSVELASRRMDVLSRMVRGEK
IIVLATAEAAMQRVLPKQEFLNSRITIQSGGTISRENLISALVEFGYERVDQVDSAGQFS
IRGGIIDIFAVNRSLPLRLELFGDGVDSLREFDPASQRSVTDMGLADIMPLTEPEHSGKP
AVFVSYLPADSCLVLDEPARIREQMTKIVKENPDIKRRVFSWTELTAACQAYTVIYLSLL
LQKIPGTQPASIISIAAKGIAPFHRQMDMLIAEIKNWQDKKQNIILFMPNRDKAANIQQH
LAEEGITAVMAQEGHMPLIPGAVVVSAGALSGGFELPQARLVVLTELDIFGRQKKKRRPR
VGKDQQITYFRDINLGDYVVHVNHGIGKYVGVETLEVGGVHKDYLHIRYAGDDKLYVPTD
QVGLLQKYIGSEGEVPRLSKMGGSDWLKVKTRAKAAVADMAKELIELYAQRQLQVGHAFG
PDTPWQREFEDAFAYEETPDQLQAITEVTHDMEQPRPMDRLLCGDVGFGKTEVAIRAAFK
AVMGGKQVAVLVPTTVLAQQHYQTFRARFAGFGPVVDVVSRFRSAREQKATLQKLALGQV
DVLIGTHRILQADVEFKDLGLLIVDEEQRFGVAQKEKMKRLRANLDVLTLSATPIPRTLH
MSLVGARDMSIIETPPEDRFPVQSYVVEYNEEIIREAIVRELKRGGQVYFVYNRVQTIDK
VRQRLTEILPDATIKTGHGQMPEELLEQVMLDFYENRDEVLICTSIIENGLDVPNANTII
VYDADHFGLSQLYQMRGRVGRSHRMAYAYFTYRRDKVLTEVAEKRLQAIKEFAELGSGFK
IAMRDLEIRGAGNLLGREQHGHIVSVGFEMYCRLLDEAVAELKTGNPVLPIPEPTIELNI
DAYLTGDYISDAMHKIEIYQRIAAVRQEEHLAELIDELVDRFGEPPLPVINLLGVARIKN
LARRIGVRSISERESRIEIIFSETPHVADGGLMNAKNLFPGKLAFLPGPPETMRLTTSRL
SLPLIDALTKLFQVLTGTEKC
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaaaacaatattaacgctgtttgctgctttccatgaggataagcagcttatg
gccgcgcaagccgctttcggggcaatcggtaatcagagcgtcatttatggcgtgactggc
gcgcaaaaaagcgtacttatggcggctgcatttcaggcatcgccccggccgaccattatc
attgccgccagtcacgaagccgttgaaatgctgcgcactgattttgcggccctgctgccg
caggtgccggtcgtggaattgccggcgattgatatgattacttttgcggccgccgctaag
agcgttgaactggcttcccggcgcatggacgttttgagccggatggtacggggggagaaa
attattgttttggcaactgctgaagctgcgatgcagcgggttttgccgaagcaagaattt
ctaaacagtcggattacgatccagagcggcggaacgataagccgcgagaatcttattagt
gctctggtcgaatttggctatgagcgggttgaccaggtggatagtgccggtcaatttagt
atccgcggtggtattattgatatttttgctgttaaccggagcctgccgctccggttagag
ttgtttggcgatggggttgattcactgcgtgagtttgatccggccagccagcgctcggtg
acagatatgggattagccgatattatgcctctgactgagcctgagcacagtggcaagccg
gcggtatttgtgtcttatcttcctgccgattcctgtcttgtgcttgatgaaccggcacgg
atcagggaacagatgactaaaattgtcaaagaaaacccggatataaaacgccgggttttt
agctggactgagctaaccgctgcctgccaggcgtatacggtcatttatttatccttgctg
ctgcaaaaaatacccggcacgcagcctgcctctattatcagtattgcggccaaaggcatc
gcgccgttccatcgccagatggatatgctgattgccgaaattaaaaactggcaggataaa
aaacaaaatattattttatttatgcccaaccgtgacaaggcagccaatattcagcagcat
ctggccgaagaagggattacagcggtcatggcccaggaggggcacatgccgctgattccg
ggcgctgttgttgtatcggcaggtgctttgtcaggcggctttgaattgcctcaggccagg
ctggttgttttgaccgagttggatatttttggccgtcagaagaagaaacggcgcccgcgg
gttggtaaagaccagcagattacctacttccgggatattaatcttggcgattatgttgtt
catgttaatcatggtatcggcaaatatgttggcgttgaaaccctggaggtcggcggtgtt
cataaagattatctccatatccgctatgccggtgacgataagctgtatgtgccaacagat
caggtaggccttttacaaaaatatattgggtctgagggggaagtgccccgtttaagcaaa
atggggggcagcgactggctgaaagtaaagaccagggcgaaagcggctgtggccgatatg
gctaaagagctgatcgaactttatgcccagcgtcaactgcaggtcggtcacgcttttggt
cctgacaccccctggcagcgggaatttgaagatgcttttgcctatgaggaaaccccggat
caactgcaggctattactgaggttactcatgatatggaacaaccacgtcccatggaccgg
ctgctgtgtggtgatgtgggctttgggaaaacggaggtggcgattcgtgccgcttttaaa
gccgtcatggggggcaagcaagtggcggtcctggtgccgacgacggttctggcgcagcag
cactatcaaacctttagggcgcggtttgccggttttggcccggttgttgatgttgtcagc
cggtttcgcagcgcccgggaacaaaaggcaactctgcagaagctggcacttggccaggta
gatgtgcttatcggcactcatcgtattcttcaggccgatgtggaatttaaagacctgggg
ctgctgattgttgatgaagaacagcggtttggtgtggcccaaaaagagaaaatgaaaaga
ctgcgggccaatcttgacgtacttaccctaagtgccacgccgatcccgcgtacgctgcat
atgtcactggtgggcgcacgcgacatgagtattattgagacgccgccggaggaccggttc
ccggtgcaaagctatgttgtggaatataatgaggaaattatccgtgaggccattgtgcgt
gagctgaagcgcggcggccaggtgtattttgtttacaaccgggtacagactatcgataag
gtacgccagcgtctaaccgaaattttgccggacgctacgataaaaacaggccacggccag
atgcctgaagaactgttggaacaggtaatgctggatttttatgagaaccgggatgaagtg
cttatttgtacgagtattattgaaaacggactggatgtgcctaatgccaatacgattatt
gtctatgatgccgatcactttggcctgtcgcagttatatcagatgcgcggacgggttggc
cgttctcatcgtatggcttatgcctattttacttacaggcgcgacaaagtgcttaccgag
gtggcggaaaagaggctgcaggccatcaaagaatttgctgaactgggctccggttttaaa
attgccatgcgtgaccttgaaatcagaggcgccggcaatcttttaggccgggaacagcac
ggccatatagtcagtgtcgggtttgaaatgtactgtcgcctgctggacgaagcggttgcg
gaattaaagaccggaaatccggttttaccaattccggaaccgaccattgaactcaacatt
gatgcctatcttacaggcgactatattagcgatgccatgcataagattgagatataccag
cggattgcagctgtgcgccaggaagagcatttagcagaactgattgatgaactggttgac
cggttcggtgaaccgccattacctgtaatcaaccttctgggggtggcccgcatcaaaaat
ctggcccgccgtattggcgtgcgctccatttctgagcgggagagccggatagaaattatt
ttcagtgaaacgccgcatgttgctgacggtggtttaatgaatgctaaaaatctttttccc
ggtaaacttgcctttcttcccgggccgccggagacgatgcggctgacgacatcacggctc
tcgctgccgctcatagatgcattaaccaagctgtttcaggtattgacaggtacagaaaaa
tgttaa
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