Sinorhizobium terangae: QA637_13890
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Entry
QA637_13890 CDS
T09097
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
steg
Sinorhizobium terangae
Pathway
steg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
steg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QA637_13890 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steg03400
]
QA637_13890 (ligD)
Enzymes [BR:
steg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QA637_13890 (ligD)
DNA repair and recombination proteins [BR:
steg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QA637_13890 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WFU46962
LinkDB
All DBs
Position
2905389..2907986
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AA seq
865 aa
AA seq
DB search
MAARNEPLSEYNRRRDFARTSEPKGTVARGHAGRKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLDPEDKRLAVRTEDHPLAYGDFEGTIPEEEYGGGTVMLWDTGWWEPEDDPT
QGLKKGKLSFQLHGKRMSGGWALVRMRPRDDEKRENWLLIKEKDKDASDDGERLVEDNLT
SVRTGRTMDEIAEGKGEKRGRVWHSNKSTAANLKAGAVAKNDNRRKPTTRKSSGKLPAFK
APQLATLVTKVPAGDEWLNEAKFDGYRLMAAVGGGTVRCYTRNGLDWTEKFPAIASALAE
LDCKSALIDGEVVALSDEGSTFSALQRAMRTGASTRLYAFDLVELDGKDLSRKPLIERKE
RLKALLDTLGPTSTVQYSEHIQGKAEHVLAAICKAGQEGIIAKEANAPYRSGRTRSWLKV
KCTKRQEFVIGGYTPSTKKGRAFASILLGTFEGDKLVYRGGVGTGFGQKTMEELAAAFAR
RKRKTSPFDSVPKERNRDSVWLKPDLVAEVDFTELTHDGHIRHGSFEGLREDKEAKAVKL
ERPNPTDAAAETGKGKRATRARTVAPAKGDADILGIRISHPDRVLFAGQGVTKIDLARYY
AVVADRMLPFAANHPVSLVRCPQGGQRQCFYQKHASDGFPKEIREVPIEEASGETEKYMY
VRDAKGLVAAVQMGTLEFHIWGATIDRLEKPDRLVFDLDPDPSVDFATVKAAAASLRDEL
ANIGLRTVAMVTGGKGVHVIVPLRPHAEWDEAKGFAKEMAQRFADRDPDNFIATMSKAKR
KGRIFIDWLRNDRGATAICPYSTRAREGGPIATPVDWDELEDLEAANTFHIPDILERIES
GTDPWADIGEIRQSLTKKILSSVGD
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcgcaacgaacccctttccgaatacaaccgacgccgcgactttgcgaggacg
agcgagcccaagggaaccgtcgcccggggacatgccggcagaaaacgctttctggtccag
aaacacgatgccacccgcttgcattacgacttccggctcgaatgggagggtgtgcttaaa
agctgggccgtaacgcgcggccctagcctcgatcccgaagacaagcgccttgcggtgcgc
accgaggaccatcccttggcctatggcgacttcgaaggcacgataccggaagaggaatat
ggcggcggcacggtcatgctttgggataccggctggtgggagccggaagacgacccaacc
caaggcctgaagaagggcaaactctcgtttcaattgcacgggaagcggatgagcggcggc
tgggcgctggtgcgcatgcggccgcgagatgatgagaagcgcgaaaactggctgctgatc
aaggaaaaggacaaggacgcctcggacgatggagaacgcctcgttgaagacaacctgacg
agtgtccgtaccggccgcaccatggatgaaattgctgaaggcaagggcgaaaagcggggg
cgggtctggcattcgaacaagagcacggccgccaatctcaaggccggcgcggttgccaag
aacgacaatcgacgcaagcccacgacccgaaaatcctccggaaagctgcccgccttcaag
gcaccgcagcttgcaaccctggtcacgaaggtacccgccggagacgaatggctgaacgaa
gccaagttcgatggctaccgcttgatggctgctgttggcggcggcaccgtccgctgctac
acgcgcaatggtctcgactggaccgagaagtttccggccattgcctccgcacttgcagag
cttgattgcaagtccgccctgatcgacggtgaagtggtggcgctgtcggatgaaggctcg
actttttcggccctgcaaagggcgatgaggaccggcgccagcacacggctttacgctttc
gatctcgtcgaactcgacggcaaggacctgagccgcaagccgcttatcgagcgaaaggaa
cggctgaaagccttgctcgacacgctcggccccacctcgaccgtccagtacagcgagcat
attcaaggcaaagccgagcacgtgctcgccgccatttgcaaggccggacaggaagggatt
atcgcgaaggaggcgaatgctccctatcgcagcggacgcacccgaagctggctgaaggtc
aaatgtacgaaacgccaggagttcgtcatcggcggctacaccccgtcgacgaaaaaaggg
cgcgccttcgcctcgatccttctcggcaccttcgagggtgataaactggtctaccgcggc
ggcgtcggcaccggcttcgggcagaagaccatggaagagcttgcggccgccttcgcaagg
cgaaagcgcaagacgtcaccgttcgacagcgtgccaaaagaaaggaaccgggattccgtc
tggctgaagcccgatcttgtggcagaggtggacttcaccgagcttacccatgacggacat
atccgccacggctcattcgagggattgcgcgaggacaaggaggccaaagccgtgaaactg
gaaagaccgaaccccacggacgccgcggcggagaccgggaagggcaaacgcgcgacgagg
gcacggacagtggcgcctgcgaagggcgatgccgatatcctcgggatccgcatatcgcat
ccggaccgcgttctctttgccggccagggcgtcaccaagatcgaccttgcccgctactat
gcagtcgttgcggacaggatgctgcccttcgcggccaaccatcccgtttcgctggtgcgc
tgcccgcaaggcggacagcggcagtgcttctatcagaaacatgccagcgacggttttccg
aaggagattcgtgaagttccgatcgaggaggcgtcgggcgaaaccgagaaatacatgtac
gttcgcgatgcgaaaggtctcgttgccgccgtgcaaatgggtacgctggagtttcacatc
tggggtgcaacgatcgaccggctggaaaagcccgatcgcctggttttcgatctcgacccg
gatcccagtgtcgacttcgccaccgtcaaggcggctgccgccagcctgagggatgaactt
gccaatatcggcctcagaacggttgccatggtaacgggcggtaagggtgtccacgtcatt
gtgccgcttcgaccgcatgccgagtgggacgaggccaaggggttcgccaaggagatggcg
cagcgtttcgcagatcgcgatccggacaacttcatcgccaccatgtcgaaggccaagcgc
aagggccggatcttcatcgactggctcaggaacgaccgcggcgcaacggcgatttgcccc
tactccacccgcgcccgggagggcgggccgattgcgacaccggtcgactgggatgagctc
gaggatcttgaggccgccaacacattccacattccggacattcttgaacgcatcgaatcc
ggcaccgatccgtgggcggatatcggcgaaatcaggcagtcgctgacgaagaaaatactg
agttcggtcggcgactga
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