KEGG   Stenotrophomonas sp. KCTC 12332: AXG53_00405
Entry
AXG53_00405       CDS       T04408                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
stek  Stenotrophomonas sp. KCTC 12332
Pathway
stek03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:stek00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AXG53_00405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stek03400]
    AXG53_00405
Enzymes [BR:stek01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AXG53_00405
DNA repair and recombination proteins [BR:stek03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AXG53_00405
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: AMJ55262
UniProt: A0A126NIC5
LinkDB
Position
complement(83360..85897)
AA seq 845 aa
MSLVDYRRKRRFDQTREPEPGKPVPKGKRAIFVVQLHHASRRHYDFRLQVGDTLKSWAVP
KGPSYDPSVKRMAVEVEDHPVDYADFEGEIPKGQYGGGHVAQFDHGVWATEGDPQAQLAK
GHLRFELFGDKLKGGWHLVRSGKPARQPQWLLFKDRDAYASALEADDLLADVAPAPDSDK
QRAGSGKRVKKRLAAVPVKSAKPGRRKDWAKRALSLTKARKGRVPAGPFKPQLATLGQAP
PLGAQWLHEIKWDGYRILVTISDGNVRLWSRNALEWTDKLPDIRVALEGLRLESAALDGE
LIAGSGTKEDFNLLQATLSGERQGQLTLVLFDVLHLDGIEVTNAPLLERKALLQELLKGA
PPHLAFSSHVEADGEAAFRLAAEQHFEGVISKRADRAYRPGRSEDWRKTKQLASDEFAVV
GYTAPKGARTGFGALLLAKPDPTHGWRYAGRVGTGFDAAMIRQLAPKLRGGGSKPTAHVG
TTETDLRTAKWFAPRFVVEVFYRGKGGQALLRQPSLKALRLDKDVGDLGDSDQSGTPKQK
AAAAKRGKPASRASNDALPVLSSPTKLLFPADRISKQDVWDYYLAVSDHLLPEIVGRPLS
VIRCPAGIERPCFFQKHMTAGLERVSTVTLKEESGALADYLVVDDLAGLMELVQFNTLEF
HPWGARADTPDVADRVVFDLDPGPDVPFAEVKRAATDIRRLLAGMELQSFLRVSGGKGLH
VVVPLSPGCDWDLTRRFARGFADALAQSEPDRFLATATKSRRTRRIFVDYLRNGRGATAV
ASYSMRSRPGAPVALPLAWADLPKLHRADAFTIKEVPAKLRRRRKDPWAGIDTLKQDLSR
WDDKE
NT seq 2538 nt   +upstreamnt  +downstreamnt
atgagccttgtcgattaccgccgcaaacgccgcttcgaccagacgcgcgaacccgagccc
ggcaaaccggtgccgaagggtaaacgcgcgatcttcgtcgtccagctgcatcacgcgagc
cgtcgccactacgatttccgcctgcaggtgggcgacacgctgaagagctgggcggtgccc
aaagggcccagttacgatccctcggtgaagcggatggcggtcgaggtggaagatcacccg
gtcgactatgcggatttcgaaggagagattccaaagggccagtacggcggcgggcatgtg
gcgcagttcgaccacggcgtgtgggccaccgaaggtgacccgcaggcacaactggccaaa
ggccatctgcggttcgaattgttcggcgacaagttgaaagggggctggcatctggtgcgc
tcgggcaaaccagcgcggcagccgcaatggttgctgttcaaggaccgcgacgcctatgcc
agcgcgctggaggccgatgacctgctggccgatgtggcgcctgcgcccgacagcgacaag
caacgtgccggcagcggcaagcgggtaaagaagcggctggccgccgtgccggtgaagtcg
gcaaagcccggccgacgcaaggattgggccaagcgtgcgctgtcgctgaccaaagcccgc
aagggcagggtgccggcagggcccttcaagccacagttggcaacgctgggtcaggcgcca
ccgcttggtgcgcaatggctgcatgagatcaaatgggacggttaccgcatcctggtcacc
atcagcgatggcaatgtgcgtctgtggtcgcgcaacgcactggaatggaccgacaagctc
ccggacatccgcgtcgcattggaaggattgcggctggagtcggctgcgctggatggcgag
ctcatcgccggcagcggaaccaaggaggatttcaacctgctgcaggccacgctttcaggc
gagcggcaggggcagctcactctggtgttgttcgatgtattgcatcttgacgggatcgag
gttaccaatgcaccgctgcttgagcgcaaggcgctgctgcaggaactattgaagggtgcg
ccgccgcacctcgccttcagctcacatgtggaagcagacggagaggcggctttccgtctc
gcagcggagcagcacttcgaaggcgtgatatccaaacgggcggatcgcgcttaccgccca
ggtcgcagcgaggactggcgcaagaccaaacaactggcgtcggatgagttcgcggtagtg
gggtataccgcccccaagggtgcacgcaccggttttggcgcgttgctgttggccaaaccg
gaccccacccatggttggcgctacgccggcagggtgggtaccggtttcgatgcggcgatg
atccgccagctggcccccaaattgcgtggtggcggcagcaaaccaaccgctcatgtcggt
accactgaaaccgacctgcgcacggcgaagtggtttgctccgcgtttcgtggtcgaagtg
ttctaccgcggcaaaggtggccaagccctgctgcggcaaccttcgctcaaggcgttgcgc
ctggacaaggacgtgggcgatcttggagacagcgaccagagtggcacgccgaaacagaag
gctgccgcggccaaacgtggcaagcccgcatcgcgtgcgtccaatgatgcgctgccggtg
ctctccagcccgaccaagctgctgtttcccgccgatcggatcagcaagcaggatgtctgg
gactactacctggcggtgtccgaccatctgctgccggagatcgttggccgccccttgtcg
gtcatccgctgcccggccggcatcgaacggccgtgttttttccagaagcacatgaccgcc
ggtctggaacgggtatccaccgtcaccctgaaggaggagtccggcgcactggctgactat
ctggtggtcgatgatctggccgggttgatggagctggtccagttcaacaccctggaattc
catccgtggggtgcgagagccgacacgcccgatgtggcggacagagtggtattcgacctg
gaccccggccctgatgtgcccttcgccgaagtgaaacgcgcggccacggatatccgcagg
ttgctggcaggcatggaactgcagtcgttcctgcgcgtgtccggcggcaaaggcctgcac
gtggtggtgccactgtcgccgggctgcgactgggacctgaccaggcgtttcgcacgtggc
ttcgccgatgcgctggcgcagtccgaacccgaccgcttcctggccacggcaaccaagagc
cgccgcacccgtcgcatcttcgtcgattacctgcgcaatggccgcggcgctaccgcggtg
gcgtcgtattcgatgcgcagccgtcctggcgcaccggtggcgctgcccttggcgtgggcc
gatctgcccaagctgcaccgggcagacgccttcaccatcaaggaggttcccgcgaagctg
aggcggcgcaggaaagacccttgggcgggtatcgacacgctcaagcaggatctgtcgcgc
tgggatgacaaggaatga

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