Stenotrophomonas sp. KCTC 12332: AXG53_00405
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Entry
AXG53_00405 CDS
T04408
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stek
Stenotrophomonas sp. KCTC 12332
Pathway
stek03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AXG53_00405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stek03400
]
AXG53_00405
Enzymes [BR:
stek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AXG53_00405
DNA repair and recombination proteins [BR:
stek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AXG53_00405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMJ55262
UniProt:
A0A126NIC5
LinkDB
All DBs
Position
complement(83360..85897)
Genome browser
AA seq
845 aa
AA seq
DB search
MSLVDYRRKRRFDQTREPEPGKPVPKGKRAIFVVQLHHASRRHYDFRLQVGDTLKSWAVP
KGPSYDPSVKRMAVEVEDHPVDYADFEGEIPKGQYGGGHVAQFDHGVWATEGDPQAQLAK
GHLRFELFGDKLKGGWHLVRSGKPARQPQWLLFKDRDAYASALEADDLLADVAPAPDSDK
QRAGSGKRVKKRLAAVPVKSAKPGRRKDWAKRALSLTKARKGRVPAGPFKPQLATLGQAP
PLGAQWLHEIKWDGYRILVTISDGNVRLWSRNALEWTDKLPDIRVALEGLRLESAALDGE
LIAGSGTKEDFNLLQATLSGERQGQLTLVLFDVLHLDGIEVTNAPLLERKALLQELLKGA
PPHLAFSSHVEADGEAAFRLAAEQHFEGVISKRADRAYRPGRSEDWRKTKQLASDEFAVV
GYTAPKGARTGFGALLLAKPDPTHGWRYAGRVGTGFDAAMIRQLAPKLRGGGSKPTAHVG
TTETDLRTAKWFAPRFVVEVFYRGKGGQALLRQPSLKALRLDKDVGDLGDSDQSGTPKQK
AAAAKRGKPASRASNDALPVLSSPTKLLFPADRISKQDVWDYYLAVSDHLLPEIVGRPLS
VIRCPAGIERPCFFQKHMTAGLERVSTVTLKEESGALADYLVVDDLAGLMELVQFNTLEF
HPWGARADTPDVADRVVFDLDPGPDVPFAEVKRAATDIRRLLAGMELQSFLRVSGGKGLH
VVVPLSPGCDWDLTRRFARGFADALAQSEPDRFLATATKSRRTRRIFVDYLRNGRGATAV
ASYSMRSRPGAPVALPLAWADLPKLHRADAFTIKEVPAKLRRRRKDPWAGIDTLKQDLSR
WDDKE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgtcgattaccgccgcaaacgccgcttcgaccagacgcgcgaacccgagccc
ggcaaaccggtgccgaagggtaaacgcgcgatcttcgtcgtccagctgcatcacgcgagc
cgtcgccactacgatttccgcctgcaggtgggcgacacgctgaagagctgggcggtgccc
aaagggcccagttacgatccctcggtgaagcggatggcggtcgaggtggaagatcacccg
gtcgactatgcggatttcgaaggagagattccaaagggccagtacggcggcgggcatgtg
gcgcagttcgaccacggcgtgtgggccaccgaaggtgacccgcaggcacaactggccaaa
ggccatctgcggttcgaattgttcggcgacaagttgaaagggggctggcatctggtgcgc
tcgggcaaaccagcgcggcagccgcaatggttgctgttcaaggaccgcgacgcctatgcc
agcgcgctggaggccgatgacctgctggccgatgtggcgcctgcgcccgacagcgacaag
caacgtgccggcagcggcaagcgggtaaagaagcggctggccgccgtgccggtgaagtcg
gcaaagcccggccgacgcaaggattgggccaagcgtgcgctgtcgctgaccaaagcccgc
aagggcagggtgccggcagggcccttcaagccacagttggcaacgctgggtcaggcgcca
ccgcttggtgcgcaatggctgcatgagatcaaatgggacggttaccgcatcctggtcacc
atcagcgatggcaatgtgcgtctgtggtcgcgcaacgcactggaatggaccgacaagctc
ccggacatccgcgtcgcattggaaggattgcggctggagtcggctgcgctggatggcgag
ctcatcgccggcagcggaaccaaggaggatttcaacctgctgcaggccacgctttcaggc
gagcggcaggggcagctcactctggtgttgttcgatgtattgcatcttgacgggatcgag
gttaccaatgcaccgctgcttgagcgcaaggcgctgctgcaggaactattgaagggtgcg
ccgccgcacctcgccttcagctcacatgtggaagcagacggagaggcggctttccgtctc
gcagcggagcagcacttcgaaggcgtgatatccaaacgggcggatcgcgcttaccgccca
ggtcgcagcgaggactggcgcaagaccaaacaactggcgtcggatgagttcgcggtagtg
gggtataccgcccccaagggtgcacgcaccggttttggcgcgttgctgttggccaaaccg
gaccccacccatggttggcgctacgccggcagggtgggtaccggtttcgatgcggcgatg
atccgccagctggcccccaaattgcgtggtggcggcagcaaaccaaccgctcatgtcggt
accactgaaaccgacctgcgcacggcgaagtggtttgctccgcgtttcgtggtcgaagtg
ttctaccgcggcaaaggtggccaagccctgctgcggcaaccttcgctcaaggcgttgcgc
ctggacaaggacgtgggcgatcttggagacagcgaccagagtggcacgccgaaacagaag
gctgccgcggccaaacgtggcaagcccgcatcgcgtgcgtccaatgatgcgctgccggtg
ctctccagcccgaccaagctgctgtttcccgccgatcggatcagcaagcaggatgtctgg
gactactacctggcggtgtccgaccatctgctgccggagatcgttggccgccccttgtcg
gtcatccgctgcccggccggcatcgaacggccgtgttttttccagaagcacatgaccgcc
ggtctggaacgggtatccaccgtcaccctgaaggaggagtccggcgcactggctgactat
ctggtggtcgatgatctggccgggttgatggagctggtccagttcaacaccctggaattc
catccgtggggtgcgagagccgacacgcccgatgtggcggacagagtggtattcgacctg
gaccccggccctgatgtgcccttcgccgaagtgaaacgcgcggccacggatatccgcagg
ttgctggcaggcatggaactgcagtcgttcctgcgcgtgtccggcggcaaaggcctgcac
gtggtggtgccactgtcgccgggctgcgactgggacctgaccaggcgtttcgcacgtggc
ttcgccgatgcgctggcgcagtccgaacccgaccgcttcctggccacggcaaccaagagc
cgccgcacccgtcgcatcttcgtcgattacctgcgcaatggccgcggcgctaccgcggtg
gcgtcgtattcgatgcgcagccgtcctggcgcaccggtggcgctgcccttggcgtgggcc
gatctgcccaagctgcaccgggcagacgccttcaccatcaaggaggttcccgcgaagctg
aggcggcgcaggaaagacccttgggcgggtatcgacacgctcaagcaggatctgtcgcgc
tgggatgacaaggaatga
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