Stenotrophomonas sp. KCTC 12332: AXG53_03505
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Entry
AXG53_03505 CDS
T04408
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stek
Stenotrophomonas sp. KCTC 12332
Pathway
stek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG53_03505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stek03019
]
AXG53_03505
03009 Ribosome biogenesis [BR:
stek03009
]
AXG53_03505
Enzymes [BR:
stek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXG53_03505
Messenger RNA biogenesis [BR:
stek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXG53_03505
Ribosome biogenesis [BR:
stek03009
]
Prokaryotic type
rRNA helicases
AXG53_03505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
DUF6702
Motif
Other DBs
NCBI-ProteinID:
AMJ55805
UniProt:
A0A126NFR4
LinkDB
All DBs
Position
complement(789949..791931)
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AA seq
660 aa
AA seq
DB search
MSQDTPAPLLFADLGLSEPVMKAVADVGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
GAFALPVLSNINLSATKPQVLVLAPTRELAIQVAEAFQTYSASMPGFRVLPVYGGQPYGQ
QLSALRRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PESRQVALFSATMPQQIRRIAQTYLRDPVEVTIQSKTTTSANIRQRYWWVAGMHKLDALT
RILEVETFDAMIIFARTKAGTEELASKLQARGMAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATRQPIEEMQLPTVDAVNDHRVTKFMDRISQTLAAGDMDFYRDLLQRYEGEHNVP
AIDIAAALAKLLQGDSPFLLTPPVRERREPSFERNDRNERPARDGGFHRRDERGGDRGDR
PARFEPRFERAPRQDDGERAPRPPRGEGDFESRPRREMPPRSAPEFGMETYRIEVGHTHG
VKPANIVGAIANEAGLESRFIGRIDIHDGHSVLDLPADMPTDVLQHLKKVWVSGQQLQMR
KVEAGEEQGGAAPPFKPRFDKGDGKPGGRPGGPRGPRPGGPGGPGGSRPGGFKPRGPRNY
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgctgtttgcagatctcggcctgtccgagcctgtg
atgaaggcagtggccgatgtcggttacgagaccccgtcaccgatccaggctgccaccatt
cccgccatgctggaaggccgtgacgtgctcggccaggcgcagaccggcaccggcaagacc
ggcgccttcgcgctgccggtgctgtccaatatcaatctttccgccaccaagccgcaggtg
ctggtgctggcgccgacccgcgagctggccattcaggtcgccgaggcgttccagacctat
tccgcatcgatgccgggcttccgcgtgctgccggtttacggtggccagccttacggccag
cagctgtcggccctgcgccgcggcgtgcatgtcgtggttggcaccccgggccgtgtgatc
gatcaccttgatcgcggcaccctggatctgtccgagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagccgtgctcaagaagctg
ccggaaagccgtcaggtggcgctgttctcggccaccatgccgcagcagatccgccgcatc
gcgcagacctacctgcgcgatccggtggaagtgaccatccagtccaagaccaccacctcg
gccaacatccgccagcgttactggtgggtggccggcatgcacaagctggatgcgctgacc
cgcatcctggaagtggaaaccttcgatgcgatgatcatcttcgcgcgtaccaaggccggt
accgaagaacttgccagcaagctgcaggcgcgcggcatggccgctgccgccatcaatggc
gacatgcagcaggcgcagcgtgagcgcaccatcgccatgctgaaggaaggcaagctcgac
atcctggtggccaccgacgtggctgcccgtggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcattggccgtaccggc
cgtgccggccgcagcggcgaggcgatcctgttcgtcaccccgcgtgaaaagggcatgctg
cgccagatcgagcgcgctacccgccagccgatcgaagaaatgcagctgccgaccgtggat
gcggtcaacgatcaccgcgtgaccaagttcatggaccgcatcagccagaccctggctgcc
ggcgacatggatttctaccgcgatctgctgcagcgctacgaaggcgagcacaacgtgccg
gccatcgatatcgccgctgcactggccaagctgctgcagggtgattcgccgttcctgctg
accccgccggtgcgcgagcgccgcgaaccgtcgttcgagcgcaatgaccgcaacgagcgc
ccggcccgtgacggtggtttccatcgccgtgacgagcgtggcggtgaccgtggtgatcgc
ccggcccgtttcgagccgcgctttgaacgtgcaccgcgccaggatgacggcgagcgcgca
ccgcgtccgccgcgtggcgaaggtgatttcgagtcgcgtccgcgtcgcgaaatgccgccg
cgcagcgcgccggagttcggcatggagacctaccgcatcgaagtgggccatacccatggc
gtgaagccggccaacatcgttggcgcgattgccaatgaagccggcctggaaagccgtttc
atcggccggatcgacatccatgacggtcactcggtgctggacctgccggctgacatgccg
accgacgtgctgcagcacctgaagaaggtgtgggtgtccggtcagcagttgcagatgcgc
aaggtggaagcgggcgaagagcagggtggcgcagcgccgccgttcaagccgcgcttcgac
aagggcgacggcaagccgggcggtcgtccgggtggcccgcgcggtccgcgtccgggcggc
ccaggtggccccggtggttcgcgtccgggtggcttcaagccgcgcggcccgcgcaactac
tga
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