Stella sp. ATCC 35155: STAQ_16730
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Entry
STAQ_16730 CDS
T07954
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stel
Stella sp. ATCC 35155
Pathway
stel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STAQ_16730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stel03400
]
STAQ_16730
Enzymes [BR:
stel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STAQ_16730
DNA repair and recombination proteins [BR:
stel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
STAQ_16730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
SPOR
Motif
Other DBs
NCBI-ProteinID:
BBK36595
LinkDB
All DBs
Position
complement(1793586..1796090)
Genome browser
AA seq
834 aa
AA seq
DB search
MPKAAEGNPLAPYRAKRDFRRTREPAGAQTGAGGSRFVVQKHDATRLHYDLRLELDGVYK
SWAVTRGPSLVAGEKRLAVHVEDHPLDYGTFEGTIPKGQYGGGTVLVWDQGTWQPEGDPE
RGYRKGQLDFALEGERLHGRWHLVRIRGKPGEKRENWLLIKGNDAAARPADAADILEERP
ESVLSGRDIPAVAGDADPPARKRSARGGKRKADPPRDSGAEEMPEFVEPCLATLRTRAPA
GRRWIHEIKFDGYRIQVRIADGQARIRTRSGLDWTGRFGDRISAALAALPLRSALLDGEI
AVEGPSGASDFALLQADLSEDRQDRFVVWLFDLLYLDGEDLREMPLLRRKQRLAEVLGDV
GAGTIRLSEHFDAEGAAMQRHACRLALEGVVSKLRAAPYRSGRQKDWIKAKCSLRQEFVI
GGFVPSVVADDAVGSLVLGYYRKGRLQHAGRVGTGFSNRVARDLFGRLDAIGRSTAPFAG
RLGAEQRRGVRFVEPELVAEVEYRGWTADRHLRHAAFRGLREDKPADSVEIEQPVRPGEQ
ERPAFAVRLTHPDRVYWPDAGVTKEGLAEYYAQTWRHMAPFVVGRPLALVRCPDGIAGAC
FFQKHGWRGMPKVIRRADDPKDGGQLLAIDGLDGAIGLVQSGVLEIHPWGATLADIERPD
LLTFDLDPGEGVSWSDVIAAAQEVRARLEAAGLAAFVKTSGGKGLHVVTPLRPAADWAAA
KAFCRAVAEAMAGDSPDRYVAKATKAARRKRIFVDYLRNGRGATAVAPYSPRARSGAPVS
MPVGWEELSTEIGPAWFTIANAQTRLAGLPADPWADFAKAAVPLPEAARPSRRR
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggccgcagaaggcaacccgcttgcgccctatcgcgccaagcgcgacttccgc
cgcacccgcgagcccgcaggcgcgcagacaggcgccggaggatcgcgcttcgtcgtccag
aagcatgacgccacccgcctgcactatgatctccggctggagctggatggggtctacaag
agctgggcggtgacccgcgggcccagcctcgtcgccggcgaaaagcgcctggcggtgcat
gtcgaggaccacccgctcgactacggcaccttcgaggggacaatcccgaagggccagtat
ggcggcggcaccgtgctggtctgggaccagggcacctggcagccggagggcgaccccgag
cgcggctaccgcaaggggcagctcgatttcgcgctggagggcgagaggctgcacggccgc
tggcacctcgtccgcatccgcggcaagcccggagaaaagcgcgagaactggcttctgatc
aaaggcaacgatgccgccgcgcgcccagccgacgccgccgacatcctggaggagcgtccc
gagtccgtcctcagcggccgcgatatcccggcggtggccggcgacgccgatccacctgcc
cgcaagcggtccgcgcgcggaggcaagcgcaaggccgatccgccgcgcgacagcggggcc
gaagagatgcccgaattcgtcgaaccgtgccttgcgacgctgcggaccagggcgcccgcc
ggccggcgctggattcacgagatcaagttcgacggctatcgcatccaggtccgcatcgcc
gacgggcaggcgcgcatccggacccgctccggtctcgactggaccggtcgcttcggcgac
cgcatctccgcggcgctggccgccctgccgctccgctccgcgctcctcgacggggaaatc
gccgtcgagggaccgtcgggcgcctccgacttcgcgctgctccaggccgatctgtcggag
gatcggcaggaccgtttcgtcgtctggttgttcgacctgctctatctcgacggagaggat
ctgcgggaaatgccgctgctgcgccgcaagcagcggctggcggaggtgctcggggatgtc
ggcgccgggacgatccgcctcagcgaacacttcgacgccgagggcgcggcgatgcagcgc
catgcctgccggctggccctggaaggcgtcgtctccaagctgcgcgccgccccctatcga
tccggccggcagaaggactggatcaaggcgaaatgcagcctgcggcaggagttcgtgatc
ggcggcttcgtgccgtctgtcgtcgccgacgatgccgtcggctcgctcgtcctgggctac
tatcggaagggccgcctccaacacgccggccgcgtcgggacgggcttctcgaaccgcgtc
gcgcgcgacctcttcggccggctggacgcgatcggccgctcgactgcgcccttcgccggg
cgcctcggcgccgagcagcggcgcggcgtccgcttcgtcgagcccgaactggtggccgag
gtcgagtatcgcggctggacggccgaccgccacctgcgccacgccgccttccggggcctt
cgcgaagacaagccggccgacagcgtcgagatcgagcagccggtccggccgggcgagcag
gagcgccccgccttcgccgttcgcctgacccatcccgatcgcgtctactggccggatgcc
ggcgtcaccaaggaggggctggccgagtactacgcgcagacctggcgccatatggcgccg
ttcgtcgtcggccgcccgctggcgctggtgcgctgtcccgacggcatcgccggggcgtgc
ttcttccagaagcatggctggcggggcatgccgaaggtgatccgccgcgccgacgacccc
aaggacgggggccagctcctcgccatcgacggcctggacggcgccatcggcctcgtccag
tcgggcgtgctggagatccatccctggggtgcgacgctggcggatatcgagcgacccgac
ctcctgaccttcgacctcgacccgggagagggtgtctcctggtccgacgtgatcgcggca
gcgcaggaggtccgcgcgcgcctggaggccgccgggctcgccgccttcgtcaagacctcg
ggcggcaagggcctccatgtcgtcaccccgctgcgaccggccgccgactgggccgccgcc
aaggcgttctgccgcgccgtcgccgaggccatggccggcgattcgccggatcgctacgtc
gccaaggcgaccaaggcggcgcggcggaagcgcatcttcgtggactatctgcgcaacggc
cgcggcgcgaccgcggtggcgccctacagcccgcgggcgcgcagcggcgcgccggtctcc
atgcccgtcggctgggaggagctgtcgaccgagatcgggccggcctggttcacgatcgcc
aacgcccagacgcgcttggctggtctccccgccgatccctgggccgatttcgcgaaggcc
gcggtcccgctgccggaagccgcgcgtccatcgcgccgacgctga
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