Stenotrophomonas sp. WZN-1: CCR98_00115
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Entry
CCR98_00115 CDS
T04963
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CCR98_00115 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_00115 (ligD)
Enzymes [BR:
sten01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CCR98_00115 (ligD)
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CCR98_00115 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
SPOR
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARZ72662
UniProt:
A0A1Z2LEF5
LinkDB
All DBs
Position
24592..27084
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AA seq
830 aa
AA seq
DB search
MSLHQYRRKRRLGGGTGQTPEPDDTPARGDLQRRPIFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRAGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVVVFDHGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRGDEEARDAEADDLLGAPVPK
RASAVMKRTVGKTGRAAPAARTSPRKADARWHARALKLDGARDAPYPHEFKPQLTDHRDS
APDGAHWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTDDFPEVVQAVRALPVRDARLDG
ELVVLDPEGRSDFAALQRVIDGSSKQSLRYIVFDLPGVANADISRAPLLQRKALLKDLIG
PMPGILAFSEHVIDHGPQVFDASGEAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFV
IVGYTAPRGSRVGFGSLLLATPDKEGLRYVGRVGTGFDGENLRALLKALQPLAVKTPVLQ
LPAHVPFRAASVCWVKPVTVAEVAFRGWGKEGLLRQASFKRLRSDKRKEDLGMSKTTAVA
EPGGEVQITHPERVVFPRQKLSKGDVADYYRQMARWILPEIAGRPLSLLRCPDGVGKACF
FQKHHGPGLGDAVHAVPLQQKSGREDYVYIDDARGLLQLVQMNTLELHPWGATVADPEHP
DRLVFDLDPGDGVSWAQVKAGARDVRDRLQQVGLESFVRLSGGKGVHVVVPLQPKADWEQ
AKAFCEAFAQAMALEQPDRYVATMSKAKRDGVIFIDWLRNTRGATSVCSWSLRARDSAGV
AVPLRWEELARVSAADAFPMGKALARAKRLKGDPWQGIARLKQTLPSLKR
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgcaccagtaccggcgcaagcgccgacttggcggtggcaccgggcagacgccg
gagcccgacgacacgcccgcacgcggagatctgcagcggcggccgatctttgtcatccag
ctgcatcacgcaagctcgcgtcactacgacttccgcttggagatggacggtgtactgaag
agctgggcggtgccgaaggggccttcgctgcgcgccggcgagaagcggctggccgtggaa
gtggaagaccatccgctgtcctacgccggtttcgaaggcgacattcctgaaggccactat
ggtgctggccacgtggttgtcttcgatcacggcacctgggcctgtgaaggcgatccactg
caggcgctggccgccggaaagatcgatttcgtgctgcacgggcagcgcctggccggtggc
tggaagctggtgcgcacggcaatgaaagggcgtcaggtgcagtggctgctgatcaagcgc
ggtgacgaggaagcgcgcgatgccgaagcagacgatctgctgggcgcgcccgtgcccaag
cgcgcatccgcagtgatgaagcgcactgtggggaagacagggcgtgctgcaccagccgca
cgcacgtctccccgcaaggccgatgcacgctggcatgcgcgcgcgctgaaactggacggc
gcgcgtgatgcgccctacccgcatgaattcaaaccgcaattgaccgatcatcgcgacagt
gcgccggacggcgcgcactggctgcacgagatcaagtgggacggctaccgcctgctggcc
gatctgcacgacggcgaggtgaagctgcgctcccgcaatggcctggattggactgatgat
tttcccgaggtggtacaggccgtgcgggcgctgccggtgcgtgatgcgcgcctggacggt
gagctggtggtgctcgacccggaagggcgcagcgatttcgcggcgctgcagcgcgtgatc
gatggaagctcgaagcaatcgctgcgctacatcgtgttcgatcttccgggtgtggccaac
gcggacatcagtcgtgcgccattgctgcaacgcaaagcgctgctgaaggatctcatcgga
cccatgcccggcatcctggccttcagcgaacatgtgatcgaccacggcccgcaggtgttc
gacgccagtggcgaggcgggattcgaagggatcgtcagcaagcaggtggacgcgccctat
gtgaacacacgcgcacgcagctgggtgaaggtgaagcacgaagacaccgacgagttcgtg
attgtcggctacacggcccccaggggctcgcgggtgggtttcggatcattgttgctggca
acgccggacaaggagggcctgcgctatgtgggccgcgtcggtactggcttcgacggcgag
aacctgcgcgcgctgctcaaggcattgcagccactggcagtaaagacgcccgtgctgcag
cttccggcgcatgtgccgttccgcgccgccagcgtgtgctgggtgaagccggtgacggtg
gcggaagtggcattccgtggctggggcaaggaaggcctgctgcgccaggccagcttcaag
cggctgcgcagcgacaagcggaaggaggatctgggaatgagcaaaacaacagcagttgct
gaacccgggggcgaggtccagatcactcatccggaacgtgtggtgtttcccaggcagaag
ctcagcaagggcgatgtggccgactactaccggcagatggcgcgctggatcctgcccgaa
attgccggacggccgctgtcactgctgcgttgccccgatggcgtgggcaaggcctgtttc
ttccagaagcaccatggcccgggcctgggtgatgcggtgcatgcggtgccgctgcagcag
aagagcggccgcgaggactacgtctatatcgacgatgcgcggggcctgctgcagctggtg
cagatgaacacgctggagttgcatccctggggcgcgaccgtggccgaccccgagcatccg
gatcgactggtgttcgatctggaccctggtgacggcgtcagctgggcacaggtgaaagcg
ggcgcacgcgatgtgcgtgaccgcctgcagcaggtgggtctggagagcttcgtgcgactg
tctggcggcaagggggtgcacgtggtggtgccgctgcaacccaaggccgactgggaacag
gccaaggcgttctgcgaggcttttgcgcaggcaatggcgctggagcagcctgatcgctac
gtggcgacgatgagcaaggccaagcgtgatggagtgatcttcatcgactggctgcgcaac
acccgaggggccaccagcgtgtgctcgtggtcactgcgcgcgcgtgattccgccggtgtg
gcagtaccgctgcgctgggaagaactggcgcgggtgagcgcggccgacgcgtttccgatg
ggcaaggcgctggcgagggcgaagcggctgaagggagacccatggcagggcatcgcacgg
ttgaagcagacgctgccgtcgctgaagcggtag
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