Stenotrophomonas sp. WZN-1: CCR98_06400
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Entry
CCR98_06400 CDS
T04963
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCR98_06400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_06400
Enzymes [BR:
sten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCR98_06400
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCR98_06400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SWI2_SNF2
RecG_dom3_C
ERCC3_RAD25_C
AAA_16
LcrG
Motif
Other DBs
NCBI-ProteinID:
ARZ73817
UniProt:
A0A1Z2LHM0
LinkDB
All DBs
Position
complement(1374474..1377938)
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AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEA
DLHTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLAALHRLPTLKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLDAERRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGADEPLRVELLDEDIDSIRAFDPESQRSLDRVEAVHMLPGREVPMDEASIARVLATLRE
RFDVDTRRSALYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPGGSLPVICAGAGEAAEA
FWAQTGERYEQRRHDVERPLLPPSALYLSPELLRERLNDAPRIEVWAADHARIGDAHALG
DQPLPPLPVAAREAPAGEALRSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPSFLADDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKTTKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgcccccgcatcgccgaccgccctggcctggtacctggcccaggccgcgcgtgcg
catgacgcgcccctgctggtgatcgcccgtgacaaccacggtgccaaccagctcgaggct
gacctgcataccctgctcggcggtgacccggccctgccggtggtcgccttcccggactgg
gaaaccctgccctacgaccgcttcagcccgcacccggacatcatctcgcagcgcttggcc
gccctgcaccgcctgcccacgctgaagcgcggcctggtgatcgtgccggtgcagaccctg
ctgcagcagctggccccgcgcagctacgtgatcggtggcagcttcgatctgaaggtcggc
cagcgcctggacctggacgccgagaggcggcgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggtgacttcgccgtgcgcggtggcctgctcgacgtgtacccg
atgggtgccgacgagccgctgcgggtggagctgctggacgaggacatcgactcgatccgt
gcctttgacccggaaagccagcgttcgctggacagggtcgaggcggtgcacatgctgccg
ggccgcgaagtgccgatggacgaggccagcatcgcccgcgtgctggccacgctgcgcgag
cgcttcgatgtcgatacacgacgcagcgcgctgtaccaggacctgaagtccgggctggcc
ccggccggcgtcgagtactacctgccgctgttcttcgagcgcaccgcgaccctgttcgac
tacctgcccggcggcagcctgccggtgatctgtgccggtgccggcgaagccgccgaggcg
ttctgggcgcagaccggcgagcgttatgagcagcgccgccacgatgtcgagcggccgctg
ctgccgccgtcggcgctgtacctgtcgccggagctgctgcgcgagcgcctgaacgatgcc
ccgcgcatcgaggtatgggccgctgaccacgcacgcatcggcgacgcgcacgcgctgggc
gaccagccgctgccgccgctgccggtggccgcgcgcgaggcccccgccggcgaggcgctg
aggtcgttcctcggccactatccgggccgggtgctgatcgccgccgattcgcccggccgc
cgcgaggcgctgctggaagtgctgcaggccgccgagctgaagccgccggtagtagccgac
ctgcccagcttcctcgccgacgatgcgcgcttcgcgatcgcggtggcgccgctggaagac
ggcttcgcgctggacgatccgcgcatcgcggtgctgaccgagcgccagctgttccccgaa
cgcgccggcagcacccgtcgcacgcgccgcgccggccgcgagccggaagcgatcatccgc
gaccttggcgagctgaccgagggtgcgccgatcgtgcatgaggaccatggcgtcggccgc
taccgcggcctgatcgcgatggacgttggcggcatgcccggcgagttcctcgaaatcgaa
tatgcaaagggcgaccgcctgtatgtgccggtcgcccagctgcacctgatcagccgctac
tccggtgcgtcggcggaaaccgcgccgctgcattcgctgggtggcgagcagtggagcaag
gccaagcgcaaggccgccgagaaggtgcgcgacgtcgccgccgagctgctggagatccag
gcccgccgccaggcgcgtgccggcctggcgctgcaggtggaccgcgccatgtacgagccg
ttcgccgccggtttcccgttcgaggaaacgccggaccagctggcggcgatcgacgccacc
ctgcgcgatctggccagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttc
ggcaagaccgaggtggcggtgcgtgcggcattcgcggccgccagtgccggcaagcaggtg
gccgtgctggtgccgaccacgctgctggccgaacagcattaccgcaacttccgcgaccgc
ttcgccgattacccgctgaaggtcgaggtgctgtcgcgcttcaagaccaccaaggaaatc
aaggccgagctggagaaggtcgccgccggcaccatcgacgtcatcgtcggtacccatcgc
ctgctgcagccggacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggagcag
cgcttcggcgtacgccagaaggaagcgctgaaggcgctgcgcgccaacgtgcacctgctg
accctgaccgccacgccgattccgcgcacgctcaacatggccatggccggcctgcgcgac
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcactgctgcgcgaagccttccagcgcgagctggcgcgcggtggccagctg
tacttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaggcgcgcatcggcatcgcccacggccagatgcccgagcgcgaactggaaaag
gtgatgctggacttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgag
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccgcttcggc
cttgcccagctgcaccagctgcgtggccgcgtcggccgttcgcaccaccgcgcctacgcc
tacctggtggcacccgaccgccgttcgatcaccccggatgcggagaagcgcctggaagcg
atcgcctcgatggacgaacttggcgccggcttcaccctggccacgcacgatctggagatc
cgcggcgccggcgaactgctcggtgaggaccagagcgggcagatggccgaggtcggcttc
agcctgtacaccgaactgctggagcgcgcggtgcgcagcatcaagcagggcaagctgccc
gacctggatgccggcgaggaagtgcgtggtgccgaggtcgaactgcatgtgccggcgctg
attccggaagactacctgccggacgtgcacacccgcctgaccctgtacaagcgcatttcc
agcgcccgcgacagcgatgcgctgcgcgagctgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgcggccaagcacctgttcgccatcgccgagctgaagttgaaagccaat
acgctgggcatccgcaagctcgacctgggcgagaacggtggccgcatcgtgttcgaatcc
aagccgaacatcgacccgatggcggtgatccagctgatccagaaacaaccgaacctgtac
gccatggaagggcctgacaagctgcgcatcaagcatccgctgccattgccggaagaccgc
ttcaacgcggcccgcgcccttctgaccaccctcgccccgggttga
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