KEGG   Sulfuracidifex tepidarius: IC006_1866
Entry
IC006_1866        CDS       T06394                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
step  Sulfuracidifex tepidarius
Pathway
step03030  DNA replication
step03410  Base excision repair
step03420  Nucleotide excision repair
step03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:step00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IC006_1866
   03410 Base excision repair
    IC006_1866
   03420 Nucleotide excision repair
    IC006_1866
   03430 Mismatch repair
    IC006_1866
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:step03032]
    IC006_1866
   03400 DNA repair and recombination proteins [BR:step03400]
    IC006_1866
Enzymes [BR:step01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IC006_1866
    6.5.1.6  DNA ligase (ATP or NAD+)
     IC006_1866
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     IC006_1866
DNA replication proteins [BR:step03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    IC006_1866
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     IC006_1866
DNA repair and recombination proteins [BR:step03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     IC006_1866
   NER (nucleotide excision repair)
    Other NER factors
     IC006_1866
   MMR (mismatch excision repair)
    Other MMR factors
     IC006_1866
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: BBG24541
UniProt: A0A510DWD2
LinkDB
Position
1660968..1662749
AA seq 593 aa
MNFKLIAEYFDKLEKISSRIQLTTQLAELFKSSDPTIIDKVVYLVQGKLGPDFADIPELG
IGEKFLIKACSLSTRVPENEVEELGKKTGDLGQVIFDLKNKEDKNDILSFLGVEKSAKAL
TVIEVYDTLLKIAMQTGEKSRDMKIGLLAGLLRKATPLEAKFIIRFVEGRLRVGIGDSTI
IDALSEAFNGKAELIERAYNLRADLGEIAKIVAEKGDAELSNIKPKIGIPIRPMLGERLQ
DPAEILNKLGGKALADYKYDGERAQIHKEKDEVKIFSRRMEDITSQYPDVVNMVRSYLTL
DNTIVEGEIVAVDKISGEIRPFQELMHRRRKNDIDAAMKEYPVNLFLFDLMFASGEDYTN
KPLLERRKLLESSIKNNTDVKIAKYIITDNVDEIRKFFLQAISDGAEGLMLKSIADSSIY
QAGARGWLWIKFKKDYQSEMADTVDLVIVGGFYGKGKRGGKLSSLLLASYNPETESFDSV
CKVASGFTDEELDMIQGKLGEIKRNSKHPRVNSKLEADVWVEPVYVIEVIGAEITLSPLH
TCCFNKFQSDAGLSIRFPRFIRWREDKSPEDATTPQEIMEMYKSQTKRLTQVP
NT seq 1782 nt   +upstreamnt  +downstreamnt
atgaactttaaactcatagcagagtatttcgacaagttagaaaagatttcgtctaggatt
caattaacaacacagctggccgagttgttcaaatcttcagacccaacgataatagacaag
gtggtctatctagttcaaggtaaattaggtcctgatttcgctgacattccagagttagga
ataggagaaaaatttctcataaaggcatgtagcttatctacgagagttcctgaaaacgag
gtagaggaattaggaaagaaaactggggacttgggtcaagtaattttcgacttaaagaat
aaagaagataaaaatgatattctttcgtttttaggagtcgaaaaatcggctaaagcattg
actgtaatcgaggtatatgacactttacttaagatagccatgcaaactggagagaaaagt
agagacatgaaaataggtctattagcaggtcttttacgaaaggcaactccacttgaggct
aagttcatcataaggtttgtggaaggtaggctgagagttggtatcggtgactctactatt
atagacgctttgtcggaagcctttaatggtaaagccgaacttatagagagggcatacaat
ctaagagctgatctaggcgagatagcgaaaatagttgctgagaaaggagacgcagagcta
tccaacatcaagcctaaaataggaataccaataaggcccatgttaggcgagaggcttcag
gacccagcagagatactaaacaagttaggagggaaggcactagcagactataaatatgat
ggagagagagctcagatacataaagagaaagacgaagtgaagatattttctagaaggatg
gaagatatcacttcacagtatccagacgtggttaacatggtaagatcgtatttaacatta
gacaataccatagttgaaggcgaaatagtagcagtagataaaatctctggagaaatccgt
ccatttcaagaactaatgcatagaagaaggaaaaacgatattgatgctgcaatgaaagaa
tatcccgttaatctatttctgttcgatttgatgtttgcatcgggagaagactacactaac
aagcctttactagagagaagaaaattgttggaatcttctataaaaaataatacggatgtt
aagatagctaagtatattattacagataatgtagacgaaataaggaagtttttccttcag
gcaatttcagatggggcagaagggttgatgttgaaatctattgcagactccagtatatat
caggctggagccagaggatggctctggataaaatttaagaaagattatcaaagcgaaatg
gctgatacagtagacttggtgatagtgggaggcttctacggtaagggaaagagaggaggt
aaactgagctcattactgttagctagctataatcctgaaacggagtctttcgatagtgtc
tgtaaagtcgcctcagggttcacagacgaagaattggatatgatccaggggaaattaggt
gagattaaacgcaactcgaaacaccctagagttaattccaaactagaggccgatgtctgg
gtggagccagtgtatgttattgaagtaataggtgcagaaataacactctcacctctacac
acatgttgctttaataagtttcaaagtgatgcaggtctatcgatcagatttccaagattt
ataagatggagagaagacaaatctcctgaagacgctacaacgccccaggaaattatggaa
atgtataaatctcaaacgaaacgattgactcaagtaccatga

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