KEGG   Stenotrophomonas sp. 169: ICJ04_00120
Entry
ICJ04_00120       CDS       T08645                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
steq  Stenotrophomonas sp. 169
Pathway
steq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:steq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ICJ04_00120 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:steq03400]
    ICJ04_00120 (ligD)
Enzymes [BR:steq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ICJ04_00120 (ligD)
DNA repair and recombination proteins [BR:steq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ICJ04_00120 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme SPOR
Other DBs
NCBI-ProteinID: QNR97378
UniProt: A0A7H1ALV6
LinkDB
Position
26175..28667
AA seq 830 aa
MSLHQYRRKRRLGASQDDTPEPDDAPANGKRGKRPVFVVQLHHASHRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYASFEGDIPKGHYGAGHVDMYDHGVWGCEGDPL
QALADGKMDFVLHGERLTGAWKLVRTALKGRQPQWLLIKRDDAHARDADADDLLEDAPVK
KGKATKAKPAKSTRPATSAKQKSPAVARKADTRWRRRALELPGARDTPYPHEWSPQLTDH
RDSAPDGERWLHEIKWDGYRLLADLHDGQVTLRSRNGLDWTGDFPEVSTAIAALPVRDAR
LDGELVVLDAQGRSDFSALQRVIDGSAKQPLRYVVFDLPGIAGVDISQAPLQERKAVLKA
LIGDTPGTLAYSDHVIDHGPEVFAASGKAGFEGIISKQVDAAYVTTRARSWVKIKHENTD
EFLVVGYTAPRGSRQGFGSLLMATPDTGGLRYVGRVGTGFDDEKLRTLTRRLQALGSDTA
SVELPAHVPFRASSVHWVKPELVAEVAFRGWAKEGLLRQASFKRLRTDKTLASPQVPAPK
KKAAEPSLAISHPERVVYPALKLTKGEVAAYYRAMAPWILPEIRNRPLSLLRCPDGVGKA
CFFQKHHGQGLGSAVRAVPLQQKSGREDYVYIDDVDGLMQLVQMNTLELHPWGATVQDPE
RADRLVFDLDPGEGVSWAAIKAAARDIRARLQETGLESFVRLSGGKGLHVVVPLQPAAEW
EDAKAFCEAFAQALSQHAPDRYVATMSKAKRNGVIFIDWLRNARGATSVCSWSLRARESA
GVAVPLRWEELGRVAAADAFPMHKALARAKRLNGDPWEGITTMKQGLPTL
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgtcgctgcaccagtaccgtcgcaagcgccggttgggcgccagccaggatgacaccccc
gagcccgacgacgcgccggccaacggcaagcgcggaaaacggccggtgttcgtcgtgcag
ttgcaccatgcaagccaccgtcattacgacttccgccttgagatggacggcgtactgaaa
agctgggcggtaccgaagggcccgtccctgcgggtgggcgagaagcgcttggcggtggag
gtggaagaccacccgctgtcttatgccagcttcgagggcgacatccccaaaggacactac
ggcgccggccatgtcgacatgtacgaccacggggtgtggggttgtgaaggcgatcccctg
caggcgctggcagacggcaagatggacttcgtgctgcatggcgaacggctgacgggtgcg
tggaagctggtgcgcacggcgctgaaaggacggcagccgcagtggttgctgatcaagcgc
gacgatgcgcacgcccgcgatgcggacgccgacgatctgctggaggacgcgccagtgaag
aaaggaaaggccacgaaagccaagcccgccaagtccaccagacctgccacgtcggccaag
cagaaatcccccgctgtcgcgcgcaaggcagatacccgctggcgtcgccgcgcgctggag
ctgccgggcgcacgggataccccgtatccccacgaatggtcgccgcagctgaccgatcac
cgcgacagcgcgccggacggagagcgatggctgcacgaaatcaaatgggacggctatcgg
ctgctggccgacctgcacgacggacaggtcaccctgcgctcgcgcaacggactggactgg
acgggcgacttcccggaagtcagcacggccatcgctgccttgccggtgcgcgatgcccgc
ctggatggtgagctggtcgtgctcgacgcgcaggggcgcagtgatttcagtgcactgcaa
cgggtgatcgacggcagcgccaaacaacccctgcgctatgtggtgttcgatctgccgggc
atcgctggcgttgatatcagccaggcaccgctgcaggagcggaaagccgtgctgaaggcc
ctgatcggcgacacacccggcacgttggcctacagcgatcacgtgatcgaccatgggccg
gaggtgttcgctgccagtggcaaggccggcttcgagggcatcatcagtaagcaggtggac
gcggcctacgtcacgacccgtgcccgcagctgggtgaagatcaaacacgagaacaccgac
gagttcctggtggtgggttacaccgcgccgaggggctcgcggcagggcttcggctcgctg
ctgatggctacgccggacacgggcggcctgcgctacgttggacgcgtgggaaccggattc
gatgacgagaagctgcgcacgcttacccggcgactgcaggcattgggcagcgacacggcc
tccgtcgagctgcctgcccacgtgccgttccgtgcctccagcgtgcactgggtgaagccc
gaactggtcgctgaagtggcgtttcgtggctgggcgaaggagggacttctgcgccaggcc
agcttcaagcggctgcgcacggacaagaccctcgccagcccccaggtgcctgcgccgaag
aagaaggccgctgagccgtcgctggctatcagccatcccgaacgcgtggtgtatcccgcg
ctgaagctgaccaagggcgaggtcgcggcgtactaccgtgcgatggcaccgtggatcctg
ccggagatccgcaatcgcccgctgtccctgttgcgctgcccggatggcgtcggcaaggcc
tgcttcttccagaagcatcatgggcaagggttgggcagcgcggtacgcgccgtgcctctg
cagcagaagagcggccgcgaggactatgtctacatcgatgatgtggacgggctgatgcaa
ctggtgcagatgaacaccctggagttgcatccgtggggtgccaccgtgcaggacccggaa
cgcgcagatcgcttggtgttcgatctggatccgggggagggcgtgagctgggccgccatc
aaggcggccgcgcgggacatccgcgcgcgcctgcaggaaacggggctggagagcttcgta
cggctgtccggcggcaagggactgcatgtggtggtgccgttgcagcccgccgctgagtgg
gaagacgcaaaggcgttctgcgaggcattcgcacaggcgctttcgcagcatgcgccggat
cgctacgtggccacgatgagcaaggccaagcggaatggcgtgatcttcatcgactggctg
cgcaacgcgcgcggggcgaccagcgtctgttcgtggtcactgcgtgcacgcgaaagcgcg
ggcgtggcggtgccattgcgctgggaagagctgggccgcgtggcggccgctgatgcgttc
ccgatgcacaaggcattggcgcgggccaagcgcctgaacggtgatccctgggaagggatc
accacgatgaagcagggcctgccgacgttgtag

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