Stenotrophomonas sp. 169: ICJ04_00120
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Entry
ICJ04_00120 CDS
T08645
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ICJ04_00120 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steq03400
]
ICJ04_00120 (ligD)
Enzymes [BR:
steq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ICJ04_00120 (ligD)
DNA repair and recombination proteins [BR:
steq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ICJ04_00120 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
SPOR
Motif
Other DBs
NCBI-ProteinID:
QNR97378
UniProt:
A0A7H1ALV6
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All DBs
Position
26175..28667
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AA seq
830 aa
AA seq
DB search
MSLHQYRRKRRLGASQDDTPEPDDAPANGKRGKRPVFVVQLHHASHRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYASFEGDIPKGHYGAGHVDMYDHGVWGCEGDPL
QALADGKMDFVLHGERLTGAWKLVRTALKGRQPQWLLIKRDDAHARDADADDLLEDAPVK
KGKATKAKPAKSTRPATSAKQKSPAVARKADTRWRRRALELPGARDTPYPHEWSPQLTDH
RDSAPDGERWLHEIKWDGYRLLADLHDGQVTLRSRNGLDWTGDFPEVSTAIAALPVRDAR
LDGELVVLDAQGRSDFSALQRVIDGSAKQPLRYVVFDLPGIAGVDISQAPLQERKAVLKA
LIGDTPGTLAYSDHVIDHGPEVFAASGKAGFEGIISKQVDAAYVTTRARSWVKIKHENTD
EFLVVGYTAPRGSRQGFGSLLMATPDTGGLRYVGRVGTGFDDEKLRTLTRRLQALGSDTA
SVELPAHVPFRASSVHWVKPELVAEVAFRGWAKEGLLRQASFKRLRTDKTLASPQVPAPK
KKAAEPSLAISHPERVVYPALKLTKGEVAAYYRAMAPWILPEIRNRPLSLLRCPDGVGKA
CFFQKHHGQGLGSAVRAVPLQQKSGREDYVYIDDVDGLMQLVQMNTLELHPWGATVQDPE
RADRLVFDLDPGEGVSWAAIKAAARDIRARLQETGLESFVRLSGGKGLHVVVPLQPAAEW
EDAKAFCEAFAQALSQHAPDRYVATMSKAKRNGVIFIDWLRNARGATSVCSWSLRARESA
GVAVPLRWEELGRVAAADAFPMHKALARAKRLNGDPWEGITTMKQGLPTL
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgcaccagtaccgtcgcaagcgccggttgggcgccagccaggatgacaccccc
gagcccgacgacgcgccggccaacggcaagcgcggaaaacggccggtgttcgtcgtgcag
ttgcaccatgcaagccaccgtcattacgacttccgccttgagatggacggcgtactgaaa
agctgggcggtaccgaagggcccgtccctgcgggtgggcgagaagcgcttggcggtggag
gtggaagaccacccgctgtcttatgccagcttcgagggcgacatccccaaaggacactac
ggcgccggccatgtcgacatgtacgaccacggggtgtggggttgtgaaggcgatcccctg
caggcgctggcagacggcaagatggacttcgtgctgcatggcgaacggctgacgggtgcg
tggaagctggtgcgcacggcgctgaaaggacggcagccgcagtggttgctgatcaagcgc
gacgatgcgcacgcccgcgatgcggacgccgacgatctgctggaggacgcgccagtgaag
aaaggaaaggccacgaaagccaagcccgccaagtccaccagacctgccacgtcggccaag
cagaaatcccccgctgtcgcgcgcaaggcagatacccgctggcgtcgccgcgcgctggag
ctgccgggcgcacgggataccccgtatccccacgaatggtcgccgcagctgaccgatcac
cgcgacagcgcgccggacggagagcgatggctgcacgaaatcaaatgggacggctatcgg
ctgctggccgacctgcacgacggacaggtcaccctgcgctcgcgcaacggactggactgg
acgggcgacttcccggaagtcagcacggccatcgctgccttgccggtgcgcgatgcccgc
ctggatggtgagctggtcgtgctcgacgcgcaggggcgcagtgatttcagtgcactgcaa
cgggtgatcgacggcagcgccaaacaacccctgcgctatgtggtgttcgatctgccgggc
atcgctggcgttgatatcagccaggcaccgctgcaggagcggaaagccgtgctgaaggcc
ctgatcggcgacacacccggcacgttggcctacagcgatcacgtgatcgaccatgggccg
gaggtgttcgctgccagtggcaaggccggcttcgagggcatcatcagtaagcaggtggac
gcggcctacgtcacgacccgtgcccgcagctgggtgaagatcaaacacgagaacaccgac
gagttcctggtggtgggttacaccgcgccgaggggctcgcggcagggcttcggctcgctg
ctgatggctacgccggacacgggcggcctgcgctacgttggacgcgtgggaaccggattc
gatgacgagaagctgcgcacgcttacccggcgactgcaggcattgggcagcgacacggcc
tccgtcgagctgcctgcccacgtgccgttccgtgcctccagcgtgcactgggtgaagccc
gaactggtcgctgaagtggcgtttcgtggctgggcgaaggagggacttctgcgccaggcc
agcttcaagcggctgcgcacggacaagaccctcgccagcccccaggtgcctgcgccgaag
aagaaggccgctgagccgtcgctggctatcagccatcccgaacgcgtggtgtatcccgcg
ctgaagctgaccaagggcgaggtcgcggcgtactaccgtgcgatggcaccgtggatcctg
ccggagatccgcaatcgcccgctgtccctgttgcgctgcccggatggcgtcggcaaggcc
tgcttcttccagaagcatcatgggcaagggttgggcagcgcggtacgcgccgtgcctctg
cagcagaagagcggccgcgaggactatgtctacatcgatgatgtggacgggctgatgcaa
ctggtgcagatgaacaccctggagttgcatccgtggggtgccaccgtgcaggacccggaa
cgcgcagatcgcttggtgttcgatctggatccgggggagggcgtgagctgggccgccatc
aaggcggccgcgcgggacatccgcgcgcgcctgcaggaaacggggctggagagcttcgta
cggctgtccggcggcaagggactgcatgtggtggtgccgttgcagcccgccgctgagtgg
gaagacgcaaaggcgttctgcgaggcattcgcacaggcgctttcgcagcatgcgccggat
cgctacgtggccacgatgagcaaggccaagcggaatggcgtgatcttcatcgactggctg
cgcaacgcgcgcggggcgaccagcgtctgttcgtggtcactgcgtgcacgcgaaagcgcg
ggcgtggcggtgccattgcgctgggaagagctgggccgcgtggcggccgctgatgcgttc
ccgatgcacaaggcattggcgcgggccaagcgcctgaacggtgatccctgggaagggatc
accacgatgaagcagggcctgccgacgttgtag
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