Sphingopyxis terrae: AOA14_18585
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Entry
AOA14_18585 CDS
T04307
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ster
Sphingopyxis terrae
Pathway
ster03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ster00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AOA14_18585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ster03400
]
AOA14_18585
Enzymes [BR:
ster01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AOA14_18585
DNA repair and recombination proteins [BR:
ster03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AOA14_18585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AMU96609
UniProt:
A0A142W3R3
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All DBs
Position
3884329..3886179
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AA seq
616 aa
AA seq
DB search
MARRSAPDRAKSAAGNPPAFRPVQLARLVDVAPAGSGWLHEMKYDGYRLLVAVGGGEARA
YTRSGLDWSGRFAPLLTAVAALDVESALIDGEAVVLDADGRSNFQALQNALRNDAGKIAY
YAFDLLELDGEDLTDRPLTERKARLETIVPGRGRIRYSDHIEGSGERLFARFCKAGLEGV
ISKRADSRYVGARSGSWLKIKCIRRQEFVIVGWTPSDKARGFRSLMLGAHERGRLRYAGK
VGTGFDAAELRRLEALMKPLARRSPTVQAPPAEVRDARWIEPRLVAEIAYAERTRKGTLR
HPSYLGLREDKKVQSIEFETEEDVTMASEPAAVPISSRDRVIFPEAGVTKGDLADYYAAM
APVMLPWAGSRPISLVRCPQGRAKKCFFQKHDTGSFGEAVKHVAIEEKDGETEPYIYIDT
PEGLLSCVQMGTIEFHGWGARIEDIEKPDRLVFDLDPDTGLDFAAVRAAAFRFRAILTSL
GLQSFPMLTGGKGVHVIAPLVPRADWDEVKDFARRLALAAAQADPDKFTAALPKAKRKGK
IFIDYLRNQRGATAVMPYSARAREGAPVAAPLTWKEMATIDKPSHFHVTDTAILLKRARS
KALAGWGRAEQDLPDL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcccgacgcagtgctcccgaccgtgccaaaagcgccgccggaaacccacctgccttc
cggcccgttcagctcgcgcggctcgtggatgtcgcccctgcaggaagcggctggctccac
gagatgaaatatgacggatatcgcctccttgtcgcggtcggcggcggcgaggcgcgcgcg
tatacgcgatcggggctcgactggtccggccgcttcgcgccgctgcttaccgctgtagcg
gcgctcgatgtcgaaagcgcgctgatcgatggcgaggcggtcgttctcgacgccgatggg
cgttccaatttccaggcgttgcagaatgcgctcaggaacgatgcaggaaagatcgcctat
tatgcttttgacctgctcgagctcgatggcgaggatcttacggaccggccgcttaccgag
cgcaaggcgcgcctcgaaacgattgtgcccggaaggggccgtatccgttattcggaccat
atcgagggcagtggcgaacggcttttcgcacgtttttgcaaggctgggctcgaaggcgta
atctcgaaacgcgccgacagccgctatgtcggcgcgcgctccgggagctggcttaaaatc
aagtgcatccgacgccaggagtttgtgatcgtcggttggacgccctcggacaaggcgcgg
ggctttcgttcgctgatgctaggagcccacgagagaggcaggctacgctatgcgggcaag
gtcgggacaggattcgacgcggccgagctgcgccgtctcgaggcgttgatgaaaccgctc
gcgcgcagaagtccgacggtacaagcgccgcccgcagaagtacgcgatgcgcgctggatc
gaacccaggcttgttgccgaaatcgcctatgccgaacgcacacgcaagggaacgctgcgc
catccgagctatctcggcctgcgcgaagacaagaaagtgcaatcgatcgagttcgaaacc
gaggaggacgtcaccatggcaagcgaaccggcggcggtaccgatcagcagccgcgaccgc
gtcatctttcccgaggcaggcgtcaccaagggcgacctcgcggactattacgccgcgatg
gcgccggtgatgctcccctgggcgggctcgcgcccgatcagcctcgtgcgctgtccgcag
ggccgtgccaaaaaatgcttcttccagaagcatgacacgggaagcttcggcgaagcggtc
aagcatgtcgcgatcgaggagaaggacggcgagaccgagccctatatctatatcgacacg
cccgaagggctgcttagctgcgtccagatgggaacgatcgaatttcacggctggggcgcg
cgcatcgaggatatcgaaaagcccgaccgtctcgtcttcgatctcgatcccgacaccggg
ctcgacttcgcggctgtgcgcgctgccgcctttcgcttccgcgcgattctgacgtcgctc
ggcctgcaaagctttccgatgctgaccggcggcaagggggtgcacgtgatcgcgccgctc
gtgccgcgcgccgattgggacgaggtcaaggattttgcccgccgccttgcgctcgctgcc
gcgcaggccgaccccgacaaatttaccgctgcgttgcccaaggcgaagcgcaagggaaaa
attttcatcgactatctgcgcaaccagcgcggcgcgaccgcggtcatgccctattcggcg
cgcgcccgcgaaggcgcacccgtcgccgcgcccctcacatggaaagaaatggcgacgatc
gacaaaccctcgcattttcacgtcaccgacactgcgatcttgctcaagcgcgcgcgctcg
aaggcgctcgccggttggggacgcgccgagcaggatctgcccgacctgtga
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