Symbiobacterium thermophilum: STH3235
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Entry
STH3235 CDS
T00196
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sth
Symbiobacterium thermophilum
Pathway
sth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STH3235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sth03400
]
STH3235 (mfd)
Enzymes [BR:
sth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STH3235 (mfd)
DNA repair and recombination proteins [BR:
sth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
STH3235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
DUF1474
Motif
Other DBs
NCBI-ProteinID:
BAD42217
UniProt:
Q67JD3
LinkDB
All DBs
Position
complement(3448780..3452511)
Genome browser
AA seq
1243 aa
AA seq
DB search
MSSETLLQVLQASAEFSSLYDGMRRGFAEQMVYGVAGSLKSAFLAALRERTGRPALVITA
TIQQAEQFREDLETWLPGQDVALFPPMEYLPFEVMAHSPEVIGQRLSVLERLARGESLIV
VAPAAALYRGLTPSAVFRRSLLTLRPGQAIGRDELVARLVRQGYERVDMVESKGHVAVRG
EIVDLFPLAAEYPLRVAFWGDEIEEIRRFDPATQRTVEQVDALSVGPAREFILPEDGLEP
AIARIRRDLAETVARLRRIQVREAAARAGEARVEAAGAEAGGAADGEVGKGRAGRGRRRR
KDVPSLPLDAVDAAQKLEERVEGHLARLQEQIYFPGLEQYATFFYDQLETLIDYFPERPL
ILVDEPARIRDASVEAEGREADRQAAMMERGHLLPGQLGLYIGYQELFQRCRQGSAIYFS
ALGRGIPGIRPANEVGLSATTVQEFHGQWPLFAEELRRWKKQGFRIVILVGTEDRQRRIR
ELLQEAEMESGAGAAGSPVAVPPPGGVWVGLGSLEGGFQWPGQRLVVVTDREIQGRQRRR
RRGGVHGTAGATGRQGARIASYQDLQVGDYVVHATHGIGRYLGVRSETILGVTRDYLVIQ
YEGSDRLKIPTEQVDQIQKYIGAEGHEPRLNRLGGGEWAKVKSRVKESIREMAAELLRLA
ALRETLPGTAFPPDTPWQREFEDAFPYEETPDQLTAIAEIKADMEKARPMDRLLLGDVGY
GKTEVALRAAFKAATAGKQVAILVPTTILAQQHYATCKSRMEGFPINLAVLNRFKSPKEQ
AEIIRGLAEGTIDVVIGTHRLLSDDVKFKDLGLLIVDEEQRFGVAHKERIKQLRANVDVL
TLSATPIPRTLHMAMVGLRDMSIITTPPEDRYPVETFVAEYDDALVQDAIGRELSRGGQV
FYVHNRIQTLDDVAARLHRLVPEARIAVAHGQMSEDRLEKIVLDFMDGEYDVLVATTIIE
NGIDMPQVNTIIVEDADHLGLSQLYQLRGRVGRSNRLAYAYFLYRRDKVLTEASEKRLRA
IKDFTELGSGFKIAMRDLEIRGAGNILGPEQHGFIVSVGFDLYCQLLEEAVRELKGEPAP
EPEIQPNIELQVDAFISDQYVPDARQKIDAYKRIIAIRSMADVEDVADELVDRFGSLPDP
VKNLLDIARLRVHCNRLGITSIAQMRDRVTVKFLPSAARAVPFDRLALLNRRPEFRGRIE
TPRTRGGTSFTVKVGGLDARSLLRTLLLLLEQLHAEVAQTAAR
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtgagacgctgcttcaggttcttcaggcctcggcggagttcagctcgctctac
gacgggatgaggcgaggctttgcggaacagatggtatacggcgtggccggctcgctgaag
agcgcgttcctggcggcgctgcgcgagcggacgggccggcccgcgctggtgatcaccgcg
acaatccagcaggcggagcagttccgcgaggacctggagacctggcttccgggtcaggac
gtggcgctcttcccgccgatggaatacctgccctttgaggtgatggcgcattcgcccgag
gtgatcggccagcggctgtcggtgctggagcggctggcccggggcgagagcctcatcgtg
gtggcgccggccgcggcgctctaccgggggctgacgccttccgcggtgttccgccggtcg
ctgctcacgctcaggcccgggcaggcgattgggcgggacgagctggtcgcgcgcctcgtg
cggcaggggtacgaacgggtggacatggtcgagtcgaaagggcacgttgccgtgcgcggc
gagatcgtcgacctcttccccctggccgctgagtaccccctgcgcgtggccttctggggg
gacgagatcgaggagatccggcgcttcgacccggcgacccagcggacggtggagcaggtg
gacgcgctctcggtgggcccggcccgggagttcatcctgcccgaggacgggctcgagccg
gccatcgcgcgcatccgcagggacctcgcggagaccgtcgcccggctccggcgcatccag
gtgcgcgaggcggcagcccgggccggggaggcccgggtggaggccgccggagcggaggcg
ggcggcgcggcggacggcgaggtaggaaagggacgggcagggcgcgggcgccgccggcgc
aaggatgttcccagcctgccgctggacgcggtggacgcggcgcagaagctggaggagcgc
gtcgagggccacctggccaggctgcaggagcagatttacttccccgggctggagcagtac
gccaccttcttctacgaccagctggagaccctgatcgactatttcccggagcgtccgctg
atcctcgtggacgagccggcccgcatccgcgacgcgagcgtggaggccgaaggccgggag
gccgaccggcaggcggcgatgatggagcgcggacacctgctgccgggccagctcgggctg
tacatcggctaccaggagctcttccagcggtgccgccaggggagcgccatctacttcagc
gccctgggccggggcatccccggcatccggcccgccaacgaggtgggcctgtcggccacc
accgtccaggagttccacggccagtggccgctctttgcggaggagctgcggcgctggaag
aagcagggcttccgcatcgtgatcctcgttggcacggaagaccggcagcggcgcatccgg
gagttgctgcaggaggcagagatggagagcggcgccggcgccgccggttcgccggtggcc
gtgccgccgcccggcggagtctgggtgggcctggggagcctggagggaggcttccagtgg
ccggggcagcggctggtggtggtcaccgaccgggagatccagggccgccagcggcggcgc
cgccggggcggggtccacgggaccgccggggcgaccgggcggcagggcgcgcgcatcgcc
agctaccaggacctgcaggtgggcgactacgtggtccacgccacccatggcatcgggcgg
tacctgggggtccgctccgagacaattctgggcgtgacccgggactacctggtcatccag
tacgagggttccgaccggctgaagatccccacggagcaggtcgaccagatccagaagtac
atcggcgccgagggccacgagccgaggctcaaccggttgggcggcggcgagtgggcgaag
gtcaagagccgggtcaaggagtcaatccgggagatggccgcggagctgctccggctggcc
gccctgcgggagacgctgccgggcacggccttcccgcccgacaccccgtggcagcgggaa
tttgaggacgccttcccctacgaggagacgccggaccagctcaccgccatcgccgagatc
aaggcggatatggagaaggcgcggcccatggaccggctgctcctgggcgatgtgggctac
ggcaagaccgaggtggccctgcgggcggcgttcaaggctgcgacggccggcaagcaggtg
gccatcctggtgccgacgacgatcctggcgcagcagcactacgccacctgcaagagccgc
atggagggctttcctatcaacctggcggtgctcaaccggttcaagagcccgaaggagcag
gccgagatcatccgcgggctggccgaaggcaccatcgacgtggtgatcgggacgcaccgg
ctgctctcggacgacgtgaagttcaaggacctgggcctgctgatcgtggacgaggagcag
cgcttcggcgtggcgcacaaggagcgcatcaagcagcttcgggccaacgtcgacgtgctc
acgctctccgccacgcccattccccgcaccctgcacatggcgatggtggggctgcgggac
atgtcgatcatcacgacgccgccggaggaccggtatccggtggaaacctttgtcgcggag
tacgacgacgccctggtgcaggacgcgatcgggcgggagctgtcccggggcgggcaggtc
ttctacgtccacaaccgcatccagacgctcgacgacgtggccgcccggctgcaccggctg
gtccccgaggcgcgcatcgcggtggcccacgggcagatgtcggaggatcggctcgagaag
atcgtgctggacttcatggacggcgagtacgacgtgctggtggccacgaccatcatcgag
aacggcatcgacatgccgcaggtgaacaccatcatcgtcgaggacgccgatcacctgggg
ctgagccagctgtaccagctccggggccgcgtgggccgctccaaccggctggcgtacgct
tacttcctctaccggcgggacaaggttctcaccgaggcctcggagaagcggctgcgggcg
atcaaggacttcaccgagctgggctcggggttcaagatcgcgatgcgggacctggagatc
cgcggcgcaggcaacatcctcgggccggagcagcacggtttcatcgtcagcgtcggcttc
gacctctactgccagctcctggaagaggccgtacgggagctgaagggagagccggcgccc
gagcccgagatccagcccaacatcgagctgcaggtggacgccttcatctcggaccagtac
gtgcccgacgcccggcagaagatcgacgcctacaagcggatcatcgccatccgctccatg
gccgacgtcgaggacgtcgcggacgagctggtggaccgcttcggctcgctgccggacccg
gtgaagaacctgctggacatcgcccggctgcgggtccactgcaaccggctgggcatcacc
tccatcgcgcagatgcgggaccgggtgacggtgaagttcctgccctccgcggcccgcgcg
gtgcccttcgaccggctggccctgctgaaccgcaggccggagttccgggggcgcatcgag
accccgcgcacccgcggcgggaccagcttcacggtcaaggtgggcggcctggacgcccgg
tcgctgctgcgtacgctgctgctgcttttggagcagctgcacgcggaggtcgcgcagacc
gcagcccggtga
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integrated database retrieval system
