Caldimonas thermodepolymerans: IS481_08055
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Entry
IS481_08055 CDS
T06911
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IS481_08055 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_08055 (ligD)
Enzymes [BR:
sthm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IS481_08055 (ligD)
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IS481_08055 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPC33084
LinkDB
All DBs
Position
complement(1716271..1718769)
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AA seq
832 aa
AA seq
DB search
MRRDDPLAPYHARRDFRHSPEPAGRTAGRRRPARTLQFVVQRHDARRLHYDFRLEWDGTL
KSWAVPKGPSLDPQVQRLAVEVEDHPLDYARFEGTIPQGHYGAGDVAIWDRGTWVPEDED
VAAALQRGKLHFELHGERLHGSWVLFRTSGSQWMLRKRRDAHARPGDGDGVLRASAPTAS
ARRPPRAGHGDPLPEWIAPQLATLVERPPQDARWVYEVKYDGYRMLARLDGREVRLYSRN
GLDWTARLPRLAQRLSRLRLGPGWLDGEIVVMDTHGRTDFHALQAQLDGPATDVEYVVFD
VPWWQGQDLRDAPLSRRLAVLDGIFDALPADAALGRSRPLDPHHVGQAVLDAACRMQLEG
LIGKRLDAPYRSGRSPHWIKLKCRAEQEVVIGGYTEPRGSRGHLGALLVGVWGEDGQLDY
AGRVGSGFDAATLAALHARLAPDERATCPFRHRPALPGASRVHWVQPHHVAQVRYATWSR
DGLLRQASYAGLREDKPAREVVRERARPVQETATMPTAATPARSSHRPRAPRDDDTVMGV
RVTHPGRVVYGTPRVTKLEVVRYHEAMAEYLMPHLRKRPLSLLRCPQGAGGECFFQKHIE
TRLPPGVVGVEVPASDGPDTQVMVSRPEGIVALAQYGTLELHTWGARTPRLEKADRLTMD
LDPDPALPWSQVVEAARLTRVLLEELGLRPFLKTTGGKGLHVVVPLKATRGWDEVKAFAR
AVATRLASVAPQRFTAQLSKSRRRGRIFVDYLRNGRGATAIAAYSLRARDGAPVAMPLHW
DALSPHEDLRGARFNLHNAAAHVADAEAAWADYDASRATLTVKMMKALGVTP
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgcgacgacccgctcgcgccctaccatgcccggcgtgacttccggcactcgccg
gaacccgccggccgcaccgcagggcgccggcgcccggcccggacgctgcagttcgtggtc
cagcgccacgacgcgcgccggctgcactacgactttcgcctcgaatgggacggcacgctc
aagagctgggccgtgcccaaggggcccagcctggacccgcaggtgcagcgcctggccgtg
gaggtcgaggaccatccgctcgactacgcccgcttcgaaggcaccatcccgcaggggcac
tacggcgccggcgacgtcgcgatctgggaccgcggcacctgggtgccggaagacgaggac
gtggcagccgccctgcaacgcggcaagctgcatttcgagctgcacggcgagcgcctgcac
ggcagctgggtgctgtttcgcaccagcggctcgcagtggatgctcaggaagcggcgcgac
gcgcacgcacgtcccggcgacggcgacggggtgctgcgcgcctcggccccgaccgcctcc
gcgcgccgcccccctcgggccggccacggcgacccgctgcccgagtggatcgccccccag
ctcgccacgttggtcgaacgcccgccgcaggacgcgcgctgggtctacgaggtcaagtac
gacggctaccgcatgctggcgcgcctggacggccgcgaggtgcgcctgtacagccgcaac
gggctggactggaccgcgcggctgccgcggctggcgcagcggctgtcgcggctgcggctg
ggcccgggttggctggacggcgagatcgtcgtgatggacacccacggccgcaccgacttc
cacgccctgcaggcgcagctcgacggtccggcgaccgacgtcgagtacgtcgtcttcgac
gtgccctggtggcaggggcaggacctgcgcgatgcgccgctgtcgcgacgcctggccgtg
ctggacgggatctttgacgccctgcccgccgacgccgcattgggccgcagcaggccgctc
gacccgcaccacgtcggccaggccgtcctcgatgcggcctgccggatgcagctggagggc
ctgatcggcaagcggctcgacgccccctaccgcagcggccgctcgccgcactggatcaag
ctcaagtgccgtgccgagcaggaagtggtgatcggcggctacaccgagccgcgaggcagc
cgcggccacctgggcgcgctgctggtcggcgtgtggggcgaggacggccagctggactac
gccgggcgggtcggcagcggcttcgatgccgcgacgctggccgcattgcatgcccgcctc
gcaccggacgagcgcgccacctgcccgttccgccaccgcccggccctgcccggcgcctcg
cgggtgcactgggtgcagccgcaccacgtcgcgcaggtgcgctatgccacctggagccgc
gacgggctgctgcgccaggcctcgtacgccggcctgcgcgaggacaagccggcgcgcgaa
gtggtgcgcgagcgcgcccgtcccgtccaggagaccgccaccatgccgaccgctgccacc
cctgcgaggtccagccaccgcccacgggccccgcgcgacgacgacacggtgatgggggtg
cgggtcacccaccccgggcgggtcgtctacgggaccccgcgcgtgaccaagctcgaggtg
gtgcgctaccacgaggcgatggccgagtacctgatgccgcacctgcgcaagcgtcccctg
agcctgctgcgctgcccgcagggcgccggcggcgagtgcttcttccagaagcacatcgag
acgcgcctgccgcccggtgtggtcggcgtcgaggtgccggccagcgacggccccgacacc
caggtgatggtctcccggccggaaggcatcgtcgcgctggcccagtatggcacgctcgag
ctgcacacctggggcgcccgcacgccgcggctggaaaaggccgaccgcctcacgatggac
ctggacccggacccggcgctgccctggtcccaggtggtcgaagcggcccggctgacccgg
gtgctgctcgaggaactggggctgcgccccttcctcaagaccaccggcggcaagggactg
cacgtggtggtcccgctcaaggccacgcgcggctgggacgaggtcaaggccttcgcgcgg
gcggtcgcgacccggctcgcctcggtcgccccgcagcgcttcaccgcgcagctgtccaag
tcgcgccgccgcgggcgcatcttcgtcgactacctgcgcaacggccgcggcgccaccgcg
atcgctgcctactccctgcgcgcccgcgacggcgcaccggtcgcgatgccgctgcactgg
gacgccctgtcgccgcacgaggacctgcgtggcgcccgcttcaacctgcacaacgccgcc
gcgcacgtggcggatgccgaagccgcctgggccgactacgacgccagccgcgcgacgctg
accgtgaagatgatgaaggcgctgggcgtgacgccgtga
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