Caldimonas thermodepolymerans: IS481_09480
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Entry
IS481_09480 CDS
T06911
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IS481_09480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_09480 (mfd)
Enzymes [BR:
sthm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IS481_09480 (mfd)
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IS481_09480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
DUF4217
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QPC30049
LinkDB
All DBs
Position
2025559..2029005
Genome browser
AA seq
1148 aa
AA seq
DB search
MHLPPIAPGKRHTVPRPPGSADALLLATFAREQAANRTLTAIVTAEPADAQRLHDELAFF
APELRCAVFPDWETLPYDTFSPHQDLISERLATLWRVRQGEVDVVLLPASTALVRLAPPS
FLAAYTFHFKQKEKLDEASLKAQLTLAGYQHVSQVVSPGEYAVRGGLIDLYPMGSPVPYR
VDLFGDEVDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEDSRARFRARWRERMEGDPSK
ARIYKDIGNGIATAGIEYYLPLFFDETATIFEYLGEQAKLVLHGEIDEALKRFWTDTRER
YRFLKHDPERPILPPEDLFLKPEDFFALCNVHAQLAVRGQGAVDWARPLPDLSADRGAPE
PLRRLQAHLAATPHRVLIVAESPGRRESLLELLRDNRIEPPAVESLADFQSGGEKYAIAV
APLAGGFHWATGDGDAQGLQFVTETELFATAPTTRRRRKQEQVSNVDALIKDLSELKVGD
PVVHVNHGIGRYQGLLNIDLGDGPSEFLHLEYADKATLYVPVAQLHLISRYTGVSPEEAP
LHKLGSSQWERAKRKAAEQVRDTAAELLNLYARRAAREGHAFRFSAHDYEAFAASFGFEE
TPDQRAAIHAVIQDLVSPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPTTLL
AEQHYQTITDRFANWPVKVAELSRFRSTKEVNAALNGLAAGTVDIVVGTHKLLSPEVKFA
RLGLLIIDEEHRFGVRHKEAIKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQ
RRLAIKTFVRNETSSVIREAVLRELKRGGQVYFLHNEVETIENRRQKLQELLPEARIAVA
HGQMPERELERVMRDFVAQRYNVLLCSTIIETGIDVPTANTIVISRADKFGLAQLHQLRG
RVGRSHHQAYAYLLVPDVEGLTKQAAQRLEAIQNMEELGSGFYLAMHDLEIRGAGEVLGE
HQSGNMQEVGFQLYNDMLSEAVRALKAGREPDLLSPLSVTTEINLHAPALLPDSYCGDVQ
VRLNLYKRLASAETGDQIDALLEEITDRFGKLPPQGQTLFDVHRLRVLAKPYGVVKIDAA
PAAIHITFRPNPPIEPMRIIELVQKNRHIKLAGNDKLRIDKATSDPKERAQYIRDVLRSL
GTPVAQPA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttccccccatcgcccccggcaagcgccataccgtgccgcgcccgccaggctct
gccgatgcgctgctgctggccaccttcgcccgagagcaggcggcgaaccggacgctgacg
gccatcgtgacggccgagccggccgacgcgcagcgcctgcacgacgagctggccttcttc
gcaccggagctgcgctgcgcggtgtttcccgactgggagacgctgccctacgacaccttc
tcgccgcaccaagacctgatctccgagcggctggcgacgctgtggcgcgtgcgccagggc
gaggtcgacgtggtgctgctgccggcctcaaccgcactggtgcgcctggcaccgccctcc
ttcctcgcggcctacaccttccacttcaagcagaaggagaagctggacgaggcctcgctc
aaggcgcagctgacgctggccggctaccagcacgtcagccaggtggtctcgccgggcgag
tacgcggtgcgcggcgggctgatcgacctgtacccgatgggctcgccggtgccgtaccgg
gtggacctgttcggtgacgaggtggattcgatccgcaccttcgacccggacagccagcgc
agcctgtacccggtgccggaggtgcgcctgctgcccgggcgcgagttcccgatggacgag
gactcgcgcgcgagattccgcgcccgctggcgcgagcgcatggaaggcgacccgagcaag
gcgcgcatctacaaggacatcggcaacgggatcgccaccgccggcatcgagtactacctg
ccgctgttcttcgacgagacggccaccatcttcgagtacctgggcgagcaggcgaagctg
gtgctgcacggcgagatcgacgaagcgctcaagcgcttctggaccgacacgcgcgagcgc
taccgcttcctgaagcacgacccggagcgccccatcctgccgccggaagacctgttcctg
aagcccgaggacttcttcgcgctgtgcaacgtgcacgcgcagctcgcggtgcgcggccag
ggggcggtcgactgggcccgcccgctgccggacctgagcgccgaccgcggcgcgcccgag
ccgctgcggcggctgcaggcccatctggccgcgaccccgcaccgggtgctgatcgtcgcc
gagtcgcccggccgccgcgagagcctgctcgagctgctgcgcgacaaccggatcgagccg
cctgcggtcgagtcgctggccgacttccagtccggcggcgagaagtacgccatcgcggtg
gcgccgctggccgggggcttccactgggccaccggcgacggcgacgcgcaggggctgcag
ttcgtcaccgagaccgagctgttcgccaccgcgccgaccacgcgccggcgccgcaagcag
gagcaggtcagcaacgtcgacgcgctgatcaaggacctgtcggagctgaaggtcggcgac
ccggtggtgcacgtcaaccacggcatcggccgctaccaggggctgctcaacatcgacctg
ggcgacgggcccagcgagttcctgcacctggagtacgccgacaaggccacgctgtacgtg
ccggtggcgcagctgcacctgatcagccgctacaccggcgtgagccccgaggaagcgccg
ctgcacaagctgggttccagccagtgggagcgcgccaagcgcaaggccgccgaacaggtg
cgagacaccgcggccgagctgctcaacctctacgcccggcgcgccgcgcgcgagggccac
gcgttccgcttctccgcgcacgactacgaggcgttcgccgccagcttcggcttcgaggag
acgcccgaccagcgcgccgcgatccacgcggtgatccaggacctggtctcgccgcggccg
atggaccggctggtgtgcggcgacgtgggcttcggcaagaccgaggtggcgctgcgcgcg
gccttcgtcgcggtcaccggcggcaagcaggtggcgttgctggcgcccaccacgctgctg
gccgagcagcactaccagaccatcaccgaccgcttcgccaactggccggtgaaggtggcg
gagctgtcgcgcttccgctccaccaaggaggtcaacgccgcgctcaacggcctggccgcc
ggcacggtggacatcgtggtcggcacgcacaagctgctgtcgcccgaggtgaagttcgcg
cgcctggggctgctgatcatcgacgaggaacaccgcttcggcgtgcgccacaaggaggcc
atcaaggccatgcgcgccgaggtcgacgtgctcacgctcacggccacgccgatcccgcgc
acgctgggcatggcgctggaaggcctgcgcgacctctcggtcatcgccaccgcgccgcag
cggcgcctggcgatcaagaccttcgtgcgcaacgagaccagcagcgtgatccgcgaggcg
gtgctgcgcgagctgaagcgcggcgggcaggtctacttcctgcacaacgaggtcgagacc
atcgagaaccggcgccagaagctgcaggagctgctgcccgaggcgcgcatcgcggtggcg
cacggccagatgcccgaacgcgagctggagcgcgtgatgcgcgacttcgtcgcgcagcgc
tacaacgtgctgctgtgctcgaccatcatcgagaccggcatcgacgtgcccacggccaac
accatcgtcatcagccgcgccgacaagttcggcctggcgcagctgcaccagctgcgcggc
cgcgtcggccgctcgcaccaccaggcctatgcctacctgctggtgcccgacgtcgagggc
ctgaccaagcaggccgcgcagcggctggaggcgatccagaacatggaggagctgggctcg
ggcttctacctggcgatgcacgacctggagatccgcggcgccggcgaggtgctcggcgag
caccagagcggcaacatgcaggaggtcggcttccagctctacaacgacatgctgtccgag
gcggtgcgcgcgctcaaggccggccgcgagccggacctgctgtcgccgctgtcggtgacc
accgagatcaacctgcacgccccggccctgctgccagacagctactgcggcgacgtgcag
gtgcggctgaacctctacaagcgcctggcctcggccgagaccggcgaccagatcgacgcg
ctgctggaggaaatcaccgaccgcttcggcaagctgccgccgcagggccagaccctgttc
gacgtgcaccgcctgcgggtgctggccaagccgtacggcgtcgtgaagatcgacgcggcg
ccggcggccatccacatcaccttccgccccaacccgccgatcgagccgatgcgcatcatc
gagctggtgcagaagaaccgccacatcaagctggcgggcaacgacaagctgcgcatcgac
aaggccacctcggacccaaaggagcgcgcccagtacatccgcgacgtgctgcgctcgctg
ggcacgccggtggcccaacccgcctga
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integrated database retrieval system
