Streptococcus parauberis: STP_1085
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Entry
STP_1085 CDS
T01504
Name
(GenBank) DEAD box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stk
Streptococcus parauberis
Pathway
stk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STP_1085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stk03019
]
STP_1085
03009 Ribosome biogenesis [BR:
stk03009
]
STP_1085
Enzymes [BR:
stk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STP_1085
Messenger RNA biogenesis [BR:
stk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STP_1085
Ribosome biogenesis [BR:
stk03009
]
Prokaryotic type
rRNA helicases
STP_1085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEF25533
LinkDB
All DBs
Position
complement(1161169..1162782)
Genome browser
AA seq
537 aa
AA seq
DB search
MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKVRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPANRQTLLF
SATMPAPIKQIGVKFMKEPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAA
RGLDISDVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMIENLTKK
QMTPLKPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKDDAIQLASEFTPEELALY
ILSLTVQDPADQPEVEIAREKPLPFKYVGGGHGGGKSGKGGRGRNDRGRGGNRGRRDDRR
GGSRDDREGDRRKNKRDSHDASSTGSRKPKRNAKDFYNKDTKSSSKDKGFVIRNKSN
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaatttaacttatcagaagacatccaatcagcagtagtaacagctggt
tttgaaaaagcatctccaatccaagagatgactattccattagcccttgagggtaaagat
gttattggacaggcacaaacaggtactggtaaaacagcagcatttggtttgccaacttta
aacaaggtccgtacggatgaaaatatcattcaggctcttgtaattgcacctactcgtgaa
cttgctgttcagagtcaggaagaattgttccgttttggtcgtgataagggcgttaaggtt
cgctcagtttacggtggatcaagtatcgacaaacaaattaaagctttgaaatcaggagct
catattgtagttggtaccccaggacgtctattagatttaattaagcgtaaagccttaaaa
ttagatcatgttgaaacattaatccttgatgaagcagatgaaatgcttaatatgggattc
cttgaagatatcgaagcaatcatcagccgagttcctgctaatcgtcagactttgctattt
tctgctactatgccagctccgattaaacaaattggtgttaagttcatgaaagaacctgag
catgtgcaaattaaaaataaagaattaactaacgttaatgttgaacaattttacgttcgt
gttaaggaacaagaaaaatttgatactatgacacgtttgatggacgttgatcaaccagaa
ctttcaattgtatttggtcggacaaaacgtcgtgtagacgagatcactcgtggtttaaaa
ttacgtggtttccgtgctgaaggtattcatggtgaccttgatcagaataaacgtttacgt
gttattcgtgattttaaaggtgaccaagttgatattctagtagcaacagacgtggctgcg
cgtggattagatatttctgacgttactcacgtttataactacgatattactcaagatcca
gaaagctatgttcaccgtattggacgtactggccgtgctggtaaatcaggtgaatcaatc
actttcgtttccccaaatgaaatgggttacttaagcatgattgagaacctcactaagaaa
caaatgacaccacttaaaccagcgacagctgaagaagcttttcaagctaagaagaaagtg
gctcttaaaaagattgaacgtgattttgcagatgaaacgattcgttctaactttgataaa
ttcaaagatgatgccatccagcttgcttctgaatttacacctgaagaattggctttatac
atcttaagcttaactgttcaagatccagctgatcaaccagaagttgaaatcgctcgtgaa
aaaccattaccatttaaatatgttggtggtggccatggtggtggcaagagtggtaaaggc
ggacgtggtcgtaatgatcgtggccgtggtggaaatcgtggtagacgtgatgaccgtcgt
ggtggatctcgtgatgatcgtgaaggcgaccgtcgtaaaaataaacgtgatagccatgac
gcaagttcaactggctcacgtaaacctaaacgtaatgcaaaagatttttacaataaagat
acaaaatcttcaagtaaagataagggatttgttatccgtaacaagtcaaactaa
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