Sulfurisphaera tokodaii: STK_02230
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Entry
STK_02230 CDS
T00062
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sto
Sulfurisphaera tokodaii
Pathway
sto03030
DNA replication
sto03410
Base excision repair
sto03420
Nucleotide excision repair
sto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STK_02230 (lig)
03410 Base excision repair
STK_02230 (lig)
03420 Nucleotide excision repair
STK_02230 (lig)
03430 Mismatch repair
STK_02230 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sto03032
]
STK_02230 (lig)
03400 DNA repair and recombination proteins [BR:
sto03400
]
STK_02230 (lig)
Enzymes [BR:
sto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STK_02230 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
STK_02230 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
STK_02230 (lig)
DNA replication proteins [BR:
sto03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
STK_02230 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
STK_02230 (lig)
DNA repair and recombination proteins [BR:
sto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
STK_02230 (lig)
NER (nucleotide excision repair)
Other NER factors
STK_02230 (lig)
MMR (mismatch excision repair)
Other MMR factors
STK_02230 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAB65183
UniProt:
Q976G4
LinkDB
All DBs
Position
complement(245891..247693)
Genome browser
AA seq
600 aa
AA seq
DB search
MEFKLIAEYFDKLEKISSRLQLTALLTDLFKKADKNVIDKVVYLIQGKLWPDFLGYPELG
VGEKLLIKAISIAVNVKEEVVEEQLKVVGDLGEVAMRLKKTPQSASILSFLGAQSNEGLT
VEETYESLTKIALASGEGSRDIKIRSLAGLLKKASPLEAKYIVRFVDGRLRVGIGDATIM
DALSTAFTGSTSFRPLIERAYNLRADLGNIAKIIAQQGVEALKDIKPQVGIPIRPMLAER
MSDPAEILAKVGGEALVDYKYDGERAQIHKKDKEVYIFSRRLENITRMYPDVVEYVREYI
NANEVIIEGEIVAVDPESNEIRPFQELMHRKRKNDINEAIKEYPVNVYLFDLMLYEDADY
TMKPLPERRKKLEEVIKPNDKLHIAHHIYTNNVDKLMEFFYDAISNGAEGVMVKSVAKDS
IYQAGSRGFLWIKLKRDYQSEMADSVDLVVVGAFYGRGKRGGKLSSLLMAAYDPETDTFK
TVCKVASGFSDAELDELQKKLMEIKLDKKDPRVDSQLEPDIWVEPKYVAEIIGAEITLSP
EHTCCKDMVSKGAGLSVRFPRFIRWRDDKSIEDATTPKEIYEMYKMKLRKKEEEQHTDEA
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggagtttaaactcatagctgaatactttgataaacttgagaagatatcttcaaggctt
caacttaccgcattactaactgatctgtttaaaaaggctgataaaaatgtcattgataag
gtagtttatttaattcagggtaaattgtggccagactttttaggctatccagagttagga
gttggtgaaaaattacttattaaagcaatttcgattgctgtgaatgtcaaagaggaagta
gtagaagagcaattgaaagttgttggtgacttaggagaagttgcgatgagacttaagaaa
actcctcagtctgcctcaattttaagcttcttaggtgctcaatcaaatgaaggtttaacc
gttgaagaaacttatgaatctttgactaaaatagcgttggcttcaggtgagggtagtaga
gatattaaaattagatctttagctgggttactaaagaaggcttctcctttagaagcaaaa
tacatagttaggttcgtagatggaagattaagagttggaatcggtgatgccacaataatg
gatgcactatcaacagcatttaccgggagtacttcatttagaccattaatagaaagagca
tataatttaagagcggatctaggtaatattgcaaaaattattgcgcaacaaggcgtagaa
gctttaaaggacattaaacctcaagtaggaattcctataaggccgatgttagcagaaaga
atgagtgatcctgcagagattttagctaaagtaggcggtgaagctttagtagattacaaa
tatgatggggaacgtgcacaaatacataaaaaggataaagaagtatatatattctctaga
agattggagaatattactagaatgtatcctgatgttgtggaatatgtaagagaatacata
aacgctaatgaagttataattgaaggagagatagtagctgtagacccagaaagtaatgag
attagaccatttcaagagttaatgcataggaaaagaaagaatgatataaatgaagctata
aaggaatatccagtaaacgtttatctttttgatttaatgctttatgaagatgcagattat
accatgaagcctttgccagaaagaagaaagaaactagaagaagttattaaaccaaatgat
aaattacatatagctcatcatatttatacaaataatgtagataaactgatggaattcttt
tatgatgctataagcaatggagcagaaggtgtaatggtgaaatcggttgctaaagattct
atatatcaggcaggttctagaggtttcttatggattaaactgaagagagattatcaaagc
gagatggctgacagcgttgatctagtagtagtaggagcattttatggaagaggaaaaaga
ggaggtaaattgagttcattattaatggctgcatatgacccagagacagatacatttaaa
accgtatgtaaagtagcatccggctttagtgatgccgaattagatgaattgcaaaagaaa
ttaatggagattaagttagataaaaaagatccaagagttgattcacaattagaacctgat
atatgggttgaacctaaatatgttgctgaaattataggtgcagaaataacactatctcca
gaacacacgtgctgtaaagatatggtgtctaaaggtgcagggttatcagtaagatttcct
agatttataagatggagggatgataaaagcatagaagatgctacaactcctaaagaaatt
tacgaaatgtataaaatgaaattgagaaagaaggaagaagaacagcacactgatgaagca
taa
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