Sphaerodactylus townsendi (Townsend's least gecko): 125428245
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Entry
125428245 CDS
T08213
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125428245 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stow03041
]
125428245 (DDX46)
Enzymes [BR:
stow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125428245 (DDX46)
Spliceosome [BR:
stow03041
]
Complex A
U2 snRNP components
U2 related factors
125428245 (DDX46)
Complex B
125428245 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
125428245
NCBI-ProteinID:
XP_048343971
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All DBs
Position
LG03:complement(87379946..87414886)
Genome browser
AA seq
1047 aa
AA seq
DB search
MGRESRSTKQQLSKQKQHYRKRSSSRGRSGSRSRSRSPSDKRAKRGDDRRSRSRERDRRR
ERSRSRDKRRSRSRDRKRVRRSRSRERERSRERRRSRSRERRRSRSRSRRSRSSSPGKNK
KVENRSRSKEKVEGVEVTKEKKKEKEDKEEEKDKDVSNFDQNKLEEEMRKRKERVEKWRE
EQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDDEETAEGEKEGNEIEDEELDPLDAYM
EEVKEEVKKFNMRSVKGGGSEKKTGPTVTKVVTVVKTKKASPETEKKKGELMVNDQDAME
YSSEEEEVDLQTALTGYQTKHRKLLEPVDHGKIEYEPYRKNFYVEVPELAKMTQEEVNAY
RLEMEGITVKGKGCPKPIKTWVQCGISMKILNALKKHGYEKPTPIQAQAIPAVMNGRDLI
GIAKTGSGKTIAFLLPMYRHIMDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKTLG
LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADR
MFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILNKPVEVQVGGRSVVCSDV
EQKVIVIEEENKFLKLLELLGHYQEKGAVIIFVDKQEHADGLLKDLMRASYPCLSLHGGI
DQYDRDSIINDFKSGVCKLLVATSVAARGLDVKHLMLVVNYSCPNHYEDYVHRAGRTGRA
GNKGYAYTFITEDQARYAGDIIKALELSGTPVPAELEKLWNDFKDQQKAEGKTIKKSSGF
SGKGFKFDETEEALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAP
GGTSHVPAPTAGNAEKLEIAKRLALRINAQKNLGAESQVLVSFQFKDVMQQATNAILRGG
TIQAPTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQEGGQNESFKRYEEELEINDFPQT
ARWKVTSKEALHRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAE
ITRLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtccagatcaacaaagcaacagttgtccaaacaaaaacagcattatcgg
aagcgctcctcctcacgagggcgctctggtagtcgttctaggagtcgttctccatctgac
aaaagagcaaagcgtggagatgatagacgttctagaagtagggagagagatcgcagacgt
gagagatcacggagccgggacaagaggagatctcggtcacgtgacaggaaacgtgtgagg
cgttcaagaagcagagagagggaacggagtagagagaggagacgatcacggagtagagag
aggagacgatccagaagtcgcagcagacgatcccgatcttccagccctggcaagaataag
aaagtagaaaatagatcacgatctaaagaaaaggtagaaggggtagaagttaccaaggag
aagaaaaaagagaaagaagacaaagaagaagaaaaggataaagatgttagcaattttgat
cagaataaactggaagaagaaatgagaaaacgaaaagagagagtggagaaatggagagaa
gaacaacgcaagaaagcaatggaaaatattggagaattgaaaaaagaaattgaagaaatg
aagcaaggaaagaaatggagcttagaagatgatgatgatgatgatgaggaaactgcagaa
ggggagaaggaaggtaatgagattgaagatgaagaattggatccattagatgcatacatg
gaagaagttaaagaggaggtcaagaaatttaacatgagaagtgtcaaaggtggtggaagt
gaaaagaaaactgggcccacagttactaaagtcgttactgtggttaaaaccaaaaaagca
tctccagagacagaaaagaaaaaaggagagctcatggtgaatgatcaagatgccatggag
tattcctctgaagaggaggaagttgaccttcagactgcattaacaggctatcagaccaaa
cataggaaactgctggaacctgttgatcatggaaagattgaatatgagccctaccggaaa
aacttctatgttgaagttccagaactagcgaaaatgactcaagaagaggtgaatgcatat
aggctggaaatggaaggaattactgtcaagggtaaaggatgtcctaagccaatcaaaact
tgggtgcagtgtggcatttctatgaaaatactgaatgccctgaaaaagcatggctatgaa
aagcctacccccatccaggctcaagctattcctgcagttatgaatggacgtgatttaatc
ggcattgctaaaacagggagcgggaagactattgcttttttgttgcccatgtataggcac
attatggatcagaggccattagaagaaggagaaggtccaatagctgtcatcatgactcct
actcgagagctggctttacagattacaaaggaatgtaagaagttctcaaagacacttggg
cttcgagttgtatgtgtgtatggaggaacaggaataagtgaacagatcgctgaactgaaa
agaggtgctgaaataattgtttgcacacctggccgtatgattgacatgttggctgctaat
aatggtcgggtgacaaatcttcggagagtgacatatgttgtccttgacgaagctgacaga
atgtttgacatgggctttgagcctcaggtaatgcgcatagtagacaatgtaagacctgat
cgccagactgttatgttctctgctaccttccctagagccatggaggctttagctcgtcga
atattaaacaagccagttgaggtccaggttggtggcaggagtgttgtctgttctgatgta
gaacagaaagtgattgtcattgaggaagagaacaagttcttgaagcttcttgaacttctg
ggacattatcaggaaaagggagctgttatcatatttgtagataaacaagaacatgccgac
ggattgctgaaagacttaatgagagcttcttatccctgcctgtcacttcatggaggtatt
gatcagtatgatagagacagcataatcaatgattttaagagtggagtatgcaaacttctt
gtggccacatctgtagcagcgcgaggccttgatgtgaaacatctcatgcttgtagtcaac
tacagttgtcccaatcattatgaggattatgtacacagggcaggcagaaccggacgagca
ggaaacaaagggtatgcatatactttcattactgaagatcaagcacggtatgcaggtgat
ataattaaagctctggagttgtcaggtactccagttcctgcagaattggaaaaactttgg
aatgatttcaaagatcaacagaaggctgagggaaagacaattaaaaagagtagtggtttc
tctggcaaagggttcaaatttgatgaaacagaggaggctttggctaatgaacgaaagaaa
cttcaaaaagcagcacttggcttgcaagattctgatgatgaggatgcagcagttgacatt
gatgaacagattgaaagcatgttcaattcaaagaaaagagtgaaggacatggcagcacca
ggtggaacatctcatgtccctgccccaactgctggaaatgcagaaaaattagaaattgct
aagaggttggcattgagaatcaacgcacagaagaaccttggagccgagtcacaagtattg
gtctctttccaatttaaggatgtgatgcagcaagcgacaaatgctatcctgagaggtggg
acaattcaagctccaactgtgtctgcaaaaaccatcgctgagcaactggctgagaagatc
aatgccaagctcaattatgtaccaatagagaaacaagaggaggaaaaacaggagggggga
caaaatgagtcttttaagagatatgaagaagaattggagatcaatgacttcccacagact
gctcggtggaaggtaacgtcaaaggaagcgctgcacagaataagtgaatattctgaagct
gccatcactatcagaggaacatattttcctccaggcaaagagcccaaggaaggagaacga
aaaatttacttggctatagagagtgccaatgaattagctgtgcagaaagcaaaggcagaa
atcactagactcatcaaagaagagctcatcagattgcaaaattcataccaaccaactaac
aaaggaagatacaaagttttataa
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