Sphaerodactylus townsendi (Townsend's least gecko): 125429019
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Entry
125429019 CDS
T08213
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Pur_ac_phosph_N
DUF4992
VWA_3
Motif
Other DBs
NCBI-GeneID:
125429019
NCBI-ProteinID:
XP_048345703
LinkDB
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Position
LG03:complement(52648769..52769274)
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AA seq
2420 aa
AA seq
DB search
MRKKMLILAVLHAILFASTQVKAQKRERVICTNVYTADVVLLVDGSSSIGRANFRLVQAF
MEGLVVPFVNVVSENGVRFGLVQYSDDPRIEFTFSKYLNGTEVLRAIRELSYKGGNTRTG
AGLRYVADNFFGANQIRPDVPKICILITDGKSQDDVEQAVVKLKAQDIKVFAVGIKNADT
KELQKVASTPTEDYFFFVTDFKILRTLLPLMSRKVCASTGGILQTTDTQAYSGPTNLVFV
VQGTDMLRIRWTAAGGPVTGYKVQYVPLTGLGQPIAAERQEVSLGAGETSAVLRGLRGAT
EYLVTIIAQYANSIGESISGRGRTQILSGVTNFRVVEAGPSFLRLSWAAGPGGIQGYRLT
FMARGETQGEEMRLASSATSALLSNLRLNTDYVITLYPIYPQQTIAPSVITGQTLSLAGV
QHLSAQNISSQSMLLSWQGVSGATAYRVTWGLLSGQDVRSIDVDSSKNSYLLTGLQPETE
YLVTVAPIYGQLEGPKASIRKRTDIIQFLRTITVGPTSIQLAWKIIPNARGYRLEWRKAV
GVDAAKTVSLSTRENSYTLTGLQPGTEYHITLYTLYDGKEVATPVTVSQTGVEPSVGSIS
DLRITETLGNRVRLAWTGVPGATGYKIVLRNSQDGTERSQHILGSQTTVELNDLKEDIIY
VVRVSALIGSREGSAVPLNIRLRPTLVSSVSNLRMVPAGLGRIRLVWTPIPRATAYKLVI
VNTHDGTEETKQIPGDRGFIELQDLKDGVRYLVRMTTLIGSQESSPATITFHMESPSVGS
ITNLKATATGPSQLQITWNGVPGATGYKVTWRLRDGQEISRVVSADVNSYTIEGLRVGSA
YVIGVSALAGSREGSPVTTTASTAPDHVGTVSNLKVLESRSNVVRVTWVGVPGVTAYRVM
WSRLDGGAANSKLLSGSTNSFDILNLEGGVSYTVKVTALIGNREGDPVSITVTTPTVPAQ
PVVNLRVTDSSEKRIQLAWSPVPGSTGYRFTWRPVGGGPEKSQLLPARINTYEIEDLQPG
RRYEFHITSLTGNQESEAVAVVASTVCQDIHSDIAFLIHATRDNAYNAEAVRTFLSNTIS
SLGQLGPSSTQVSLVIYSYRSLPVLLFNRSGDLATVLQQIRTLRYEEPSGNAIGVAINFV
KNYVMSPNAGRRPGVPGVLVILADGPSSDEAIQQAQEIKAAGIHVLAVGMDGAAREQLRR
LVTDEDPRHVFFVRDSSSLSELEGPLASALCRAPTTDGSRPEPCAVRCPKGEKGEPGESG
RNGRIGLPGPPGEPGRNGIPGSPGPVGPRGPPGDIIERPGVKGDRGFPGADGIPGNPGRP
GNPGSSGQPGGTGLPGLKGNPGDRGLIGPIGLKGEKGERGEPGVVVDGEGGLPGQKGEPG
SPGNPGITGSPGPRGPVGYPGPLGPPGAPGPSGESVKGDKGDRGERGPPGHGDGTVLTGE
PGIPGIPGDPGPRGPPGLSGQKGEKGDGEEGFPGPPGRPGDPGDRGPRGPQGEQGSKGDR
GQPGEVGPPGEKGDRGSPGSEGEKGEQGPSGRSGPPGRDGLSGPPGSPGQKGEPGEPGIP
AAGISGIKGDKGERGPVGPEGPSGPSGEPGSKGERGSPGLSLPGIPGPKGEQGERGIVGL
SGKTGPKGDPGEPGERGEPGRSGLPGPSGLRGKEGEKGNGGEEGAPGEPGTPGKPGERGP
RGLPGNRGLPGEKGDQGDPGEDGRNGSPGASGSKGDRGDPGQPGPPGPTVSVGNGIGGQK
GEKGDPGDPGEDGMKGVRGEIGLPGQPGERGIEGPRGPTGVRGDPGDRGAVGEKGDRGPP
GLDGRNGIDGKPGQIGPAGQRGDPGKQGDPGRDGLPGLRGEQGPPGPIGLPGPTGLPGKT
GEDGKPGLNGKNGEDGTPGEDGRKGDKGEAGESGRDGREGLKGERGSSGPPGPPGAPGVP
GVPGQVGPPGQGLPGLPGTSGQKGDRGETGSKGELGRPGDPGPRGEPGTTPNVERALDAY
GIKISLLREITGAYDGSSDQFLPVPDRRKGQKGDRGDPGERGLPGKEGIIGFPGERGPKG
DTGSQGPPGPQGPIVRAIGERGPEGSPGQPGEPGKPGIPGVPGRAGELGEAGRPGEKGDR
GEKGDRGEQGRDGLQGPPGPPGPKMDIMDGILTGLPGERGPAGPKGTKGEAGQDGEKGSR
GDKGEAGPKGERGEAGEKGRDGNSGIPGERGLPGPEGKSGLPGFPGILGRPGNPGDPGPS
GPPGPVGPPGTQGPPGIKGDAGEPGSSIRGLPGPQGNVGPPGPPGPLGLVGPQGPPGLSG
QVGEPGKPGIPGRDGVPGKEGEPGLPGKVGMPGPVGAAVDPVQRMTWGCKIWERLLWDLL
VRKARRVHQVILMSSSWGSQVPKVIEVYQAPEERRGHLETRGNLEILERMEPKDHLGSEE
KRVHLGLAYKDLQDRLALQV
NT seq
7263 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaagatgctgatccttgccgtgctccatgccattctttttgcttcaactcaa
gttaaggctcagaaaagagagagagtgatctgcaccaatgtctatacagctgatgttgta
cttctggtggatggctcatctagcatcggaagagccaactttcgcctggtccaagccttc
atggagggactagttgtgccttttgttaatgtggtgagcgagaatggggtgcgttttgga
cttgtccagtacagtgatgatcccaggattgagttcacattttccaagtacctcaatgga
acagaggtgttgagggctatcagagagctgagctacaagggcgggaacacacgcacaggt
gcaggccttcgttatgtagcagataacttctttggagccaatcagatccggcctgatgtt
ccaaagatttgtatcctaatcacagatggcaaatctcaggatgatgtggagcaggcagtg
gtgaagctgaaggctcaagatattaaagtctttgctgtgggcatcaagaatgcagacacc
aaagagctccaaaaggtggcctccacacccactgaggattacttcttttttgtcactgat
tttaaaatcctgagaactctgctgcctctaatgtcacggaaggtgtgtgccagcacaggg
ggcattctacagacaacagatacacaggcttacagtggccccacaaacctggtctttgtg
gttcaggggacagacatgctgaggatccgctggactgctgctggcggtcccgtaactggc
tataaagttcagtatgtacctctcacaggcttggggcaaccaatagcagcagagagacag
gaggtcagtttgggcgctggtgagacaagtgctgtgctgcgtggtttgaggggagcgaca
gaatatctggtcaccattattgctcagtatgccaacagcattggagaatcaatttctggc
agaggacgcacccagatcttgtctggagtcacaaattttcgggtggtggaagctggacca
tcgttccttagactgtcctgggcagctggcccaggtggcatacagggctacaggctcact
tttatggctcgaggtgaaactcaaggtgaggagatgagacttgcgtccagtgctacatct
gccctgctcagcaatcttcgccttaacactgactatgtgatcacgctgtaccccatctat
ccacagcagaccatagcaccctctgtgattactggccaaacattgagtttggcaggagtt
caacatctgtctgcccagaacatttcctctcagagcatgctgctgtcttggcagggtgtg
agtggagctactgcgtatcgtgttacttggggacttctctcaggtcaggatgttcggagc
attgatgtggactcaagcaagaattcctacttgctgactggactgcaacctgaaacggag
tacctggtaactgttgctccaatttatggacagctggaagggcccaaagcctccatcagg
aagagaactgatataatccagtttctgaggaccatcactgtaggtccaacgtccatccag
ttggcctggaaaatcatccccaatgcccggggctatcggctggagtggagaaaggcagta
ggtgtggatgcagccaagactgtgtccctgtctacccgtgagaacagttatactctgaca
ggcctgcagccaggcacagaatatcacataaccctctacaccttgtatgatggcaaagag
gtagcgactccagttaccgtctcacagactggggtagaaccatcagtgggcagcatctct
gatttaaggatcactgagaccttaggaaacagagtccgcctggcttggacaggtgttcct
ggcgccacaggctataagattgtgcttcgcaattcccaagatggcacagagaggagtcaa
catattttaggttcccagaccactgtggaactgaatgatctgaaagaggatattatctat
gtcgtgcgtgtatcagctcttattggcagccgtgagggtagtgccgttcctttgaacatc
cgacttcgtccaacacttgtaagcagcgtatcaaacctgcgtatggtgccagctggattg
ggtcgcatccgacttgtgtggacccctatccccagggctacagcttataagctagtgatt
gtcaacactcatgatggcactgaggagactaaacaaatacctggtgatcgaggtttcatt
gaactgcaggatctgaaggatggagtcagatacttggtgcgaatgacaacactgataggc
agccaggagagtagtcctgccaccattacttttcacatggaaagcccatctgtaggcagc
atcaccaacctaaaggcaactgcaactgggcccagccagctgcagatcacatggaatgga
gttcctggtgctactggctataaggtgacctggcgactgagggatggtcaagagatctct
cgcgtcgtgtcagctgatgtaaactcctacactattgagggtttgagggttgggtcagcc
tacgttattggggtctcagccttggctgggagtagagaaggaagtccagtcaccaccaca
gcttcaacagcccctgaccatgtgggaactgtctccaatctcaaggtccttgagtccagg
agcaatgtggtacgagtcacgtgggttggtgtaccaggtgttacagcctacagagtgatg
tggagtcggcttgatggtggtgctgcaaacagcaaattactctcagggagcaccaattct
tttgacatcctcaacctggaaggaggagtaagctacactgtgaaagttacagcgctgatt
ggcaaccgtgagggagatcctgtgtctataactgttactacaccaacagtcccagctcaa
ccagttgtaaatctgcgtgtgactgactcatcagaaaagcgcatccagctagcatggagc
cctgtaccaggtagcacaggctatcgatttacttggcggcccgtaggtggtggaccagag
aaaagccagctgctgccagctcgcatcaatacctatgaaattgaagacttgcagccagga
aggcgttatgaattccacatcaccagcctgacaggcaatcaggagagtgaagctgtggcc
gttgttgccagcactgtttgccaggatatccacagcgatatagcctttctcatacatgca
actcgagacaatgcttacaacgcagaggctgtgcgaaccttcctctccaatacgatatct
tcactgggtcagctgggccctagctctactcaggtgagccttgtaatttacagctatcgt
agccttcctgtactcctgttcaatcgttctggtgatctcgccacagttttgcagcaaata
cgaacactgcgctatgaagagcctagtggcaatgctattggagtggccataaactttgtc
aagaactacgttatgagtcccaatgcaggccgtagaccaggtgtgccaggagtactggta
atattggcagatgggccatcaagtgatgaagctattcagcaggcccaggagatcaaggca
gcagggattcatgtgctggcagtgggcatggatggggctgctcgtgaacagctgcgccgc
ctggtaactgatgaagacccacggcacgttttctttgtgagagactcaagcagcctgtca
gagttggagggaccgcttgccagtgccctctgcagggcacctaccacagacgggtctaga
ccagagccttgtgcagtacgctgtcccaagggcgagaaaggggagcctggtgagagtggg
cggaatggacgcataggacttcctggtccccctggagaaccgggacggaatggaatccca
ggctctccaggtccagtgggacctcggggtccaccaggtgatatcattgagaggccaggt
gtgaagggagaccggggatttccaggagcagatggtataccagggaatcctggccgtcct
ggtaatcctggttcttctggccaaccaggcggcactggccttcctggtctcaagggaaac
cctggggatcgtggcctaattggtcccattgggctaaagggagagaaaggtgagcggggg
gagcctggagtggttgtagatggagaaggtggacttcctggccagaagggggaacctggc
agtccgggaaaccctggaataactggaagtcctggaccccgcggaccagttggttatcct
gggcctcttggacctcctggagcaccaggaccttctggcgaatctgttaagggagacaag
ggcgaccgaggtgagcgaggtcctcctggacatggcgacggaacagtgcttacaggagaa
ccaggcatccctggtatacctggtgatcctggacccagaggacctcctggactttcagga
cagaagggagaaaagggggatggagaagaaggttttcctggaccacctggccgccctgga
gacccaggagaccggggccctagaggacctcaaggtgaacaaggaagcaagggagaccgt
gggcagcctggtgaggttggaccacctggagagaagggagatcgtggatcccctggctct
gaaggcgagaagggagagcaaggtccatcaggccgctctggtcccccaggcagagatggc
ttgtcaggaccacctggttccccaggacaaaagggagagcctggtgaacctggaattccg
gctgccggcatctcaggaattaaaggggacaagggggaaagaggtcctgttggaccagag
ggaccatctggacccagtggagagcctggaagcaaaggagagcgtggttctcctggatta
agtctccctggcatacctggccccaaaggagaacaaggggaaagagggattgttggactt
tctggcaaaacaggaccaaagggtgaccctggagaaccaggtgagagaggagagccagga
agatcagggctgcctggaccaagtggtctgcgaggaaaagagggtgaaaagggtaacgga
ggcgaagaaggagctccaggcgagccaggtacacctggcaaacctggagaaagaggtcca
aggggtctgccaggaaatcgagggctccctggtgagaagggggaccagggggaccctggt
gaagatggaagaaacggtagtcctggagcatcaggctcaaagggtgaccgaggggatcct
gggcaacctggaccaccaggcccaacagtcagtgtaggaaatggaataggaggacagaaa
ggcgagaagggagacccaggagaccctggagaggatgggatgaaaggtgtgagaggagaa
attggattacctggccagcctggagaaaggggaattgaaggccccagaggacccactgga
gtccgtggtgacccaggagaccgaggtgctgtaggagaaaagggtgatcgaggacctcca
ggtctggatggtcgaaatgggatagatggaaaacctgggcaaattgggcctgcaggacaa
aggggtgacccaggaaaacagggtgacccaggcagagatggactacctggtctgcgtggt
gaacaggggcctcctggaccaattggtctgccggggcctacagggttgcctggtaagact
ggtgaagatggcaaacccgggctaaatgggaagaatggtgaagatgggacaccaggagaa
gatggcaggaagggggataaaggtgaagctggagagtctggcagagatggtcgggaaggt
cttaaaggagaacgagggagcagtggtcccccagggccaccaggggcaccaggtgtgcct
ggtgtacctgggcaagtgggtccaccaggccagggcctcccaggtctccctggaacatca
ggacaaaagggtgacagaggagagactggatccaaaggagagctggggagacctggggat
cctggaccacgaggtgaacctggaacaacgccaaatgttgaacgtgctctagatgcctat
ggtattaagatttctttattgcgggagatcactggtgcctatgatgggagttctgatcaa
ttcttgcctgttcctgatcgtcgaaagggccagaaaggtgacagaggggatccaggagaa
aggggtctaccaggcaaagagggtatcattggattccctggagagagaggaccaaaggga
gatacaggaagccaaggtccacctggcccacaaggtccaatagtacgagccattggagag
cggggaccagaagggtcaccaggccaaccaggagagcctgggaaacctggaattccagga
gtaccaggccgggctggagaacttggagaagctgggagacctggagagaagggtgatcgt
ggtgagaaaggtgatcgaggagagcagggtagagatggcttacaaggccctccagggcca
ccaggacccaaaatggacatcatggacgggatcctcactgggcttccaggggaacgagga
cctgcaggacccaagggaaccaagggagaagcaggacaagatggcgagaaaggctctaga
ggcgataagggtgaagcagggccaaaaggagagagaggtgaagctggtgaaaaaggcaga
gatggcaattctggcattccaggagaaagaggccttccaggccctgaagggaaatcgggc
ttgccaggctttcccggaattttgggcagaccgggtaatccaggtgaccctggaccatca
ggccctcctggtcctgttgggcctccaggcactcaaggcccaccaggaataaagggagat
gcaggggagcctggttctagcatcaggggtctaccaggtccccaaggaaatgttggacca
ccaggaccaccaggtccactgggccttgtgggacctcaagggcctccaggattgtcagga
caagtgggtgaaccagggaagccaggtataccagggagagatggagtcccgggtaaagaa
ggggaacctggattgcctgggaaagtggggatgccaggacctgtgggagctgctgtggac
ccagtgcaaaggatgacctggggatgcaagatttgggagagactgttgtgggatctcctg
gtgagaaaggcgagaagggtgcaccaggtgattttgatgtcgagcagctggggaagccag
gttccaaaggtgatcgaggtctaccaggcccccgaggagagaagggggcacctggagacc
agggggaacctggagatcctggagaggatggagccaaaggatcacctgggatcagaggag
aaaagggttcatctggggttggcctacaaggacctccaggacagattggccctccaggtt
tga
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