Sphaerodactylus townsendi (Townsend's least gecko): 125431552
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Entry
125431552 CDS
T08213
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03013
Nucleocytoplasmic transport
stow03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125431552 (UPF3A)
03015 mRNA surveillance pathway
125431552 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125431552 (UPF3A)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125431552 (UPF3A)
mRNA cycle factors
P-body specific factors
125431552 (UPF3A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
125431552
NCBI-ProteinID:
XP_048350407
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All DBs
Position
LG04:complement(101386769..101400875)
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AA seq
470 aa
AA seq
DB search
MEAQRESPRRVPDTPPPSPGPPPPPPLPPPPPSNLALPGKPQREEKRATLSKVVIRRLPP
SFTKEQLEEQLHPLPAHDYFEFCTSDPSLYPHLYSRAYINFRNPDDILLFRDRFDGYVFI
DNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYCVEEEKICANPET
LLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRESEKKRIREDEKRKR
REEERRKRKEAEKQKKIAEKEIRIKLLKKPEKGDEQTTEKHREKDIEESKWEKSPGHGSI
KSKPPEGSLKELKEKSQNDSDKEQRESDRRFHDKEPERQRYRLDDGRKHRTHYEFDKFVR
RNEDELKWGKGYSQDRGKKVSYNYSFTVDTVDKLGKEDKCDDMASKKERIRNKDRPAMQL
YQPGVRIRTHTGSTSRSYDYAEKSLEDAYDRKYEADNSTGAGSEKSEDAE
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaggctcagcgggagtccccgcgtcgtgtgccggacacccctccgccgtccccgggg
ccgcccccgccgccccctcttcctcccccgccgccttccaacctggcgctgccgggcaaa
ccacagcgcgaggagaaaagagcgacgctgagcaaagtagttatacgccggctacctcct
agctttaccaaggaacagctggaggaacagctccatccacttcctgctcatgattatttt
gaattttgtacgtctgatcccagtctttatcctcacctctactcaagagcatatattaat
tttagaaatcctgatgacatccttctttttagagatcgttttgatggctatgtcttcatt
gacaacaaaggcttagagtatcctgctgtggttgaatttgcaccattccaaaagatttca
aaaaagaagctaaagaagaaagatgcaaaagccggaagcatagaagatgatccagaatac
agaaaatttttagaaagttattgtgtcgaagaagaaaaaatctgtgccaatcctgagacc
ctgttgggagagattgaggcaaaaacaagggaactcattgctagaagaacaacacccctt
ttggaatatattaaaaatagaaaattagaaaaacagagaatacgtgaagagaaaagggaa
gaacgaaggaggagagaatcagaaaagaaacgtataagggaagatgagaaacgaaaacgc
agagaagaagaacggcgtaaaagaaaggaagcagaaaagcaaaagaaaattgctgaaaaa
gaaataaggatcaagcttcttaaaaagccagagaaaggagatgagcaaactacagagaaa
cacagagaaaaagacatagaagaaagtaaatgggagaaatctccagggcatgggagcata
aaatccaagccaccagaaggttcactaaaggaactgaaggaaaagtcacaaaatgatagt
gataaagagcaaagagaatcagaccgaagatttcatgataaagaaccagagagacaaagg
tatcggttggatgacggccgaaagcacagaactcactatgaatttgacaagtttgtgaga
aggaatgaagatgagctgaaatgggggaaaggatacagccaagaccgagggaagaaagtg
agctacaactacagcttcactgtggacacagtagacaaactgggtaaagaggacaagtgt
gatgacatggcatccaaaaaggagcgcataagaaataaggatcggccagccatgcaacta
taccagccaggagttcgcattcgaacacatacggggtctacaagtaggtcctatgactat
gctgaaaagtctctggaagatgcttatgacagaaagtatgaggcagacaattcaaccgga
gctggttctgagaagagcgaagatgcagaataa
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