Sphaerodactylus townsendi (Townsend's least gecko): 125444924
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Entry
125444924 CDS
T08213
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03030
DNA replication
stow03410
Base excision repair
stow03420
Nucleotide excision repair
stow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125444924 (LIG1)
03410 Base excision repair
125444924 (LIG1)
03420 Nucleotide excision repair
125444924 (LIG1)
03430 Mismatch repair
125444924 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stow03032
]
125444924 (LIG1)
03400 DNA repair and recombination proteins [BR:
stow03400
]
125444924 (LIG1)
Enzymes [BR:
stow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125444924 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
125444924 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
125444924 (LIG1)
DNA replication proteins [BR:
stow03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
125444924 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
125444924 (LIG1)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
125444924 (LIG1)
NER (nucleotide excision repair)
Other NER factors
125444924 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
125444924 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
125444924
NCBI-ProteinID:
XP_048373653
LinkDB
All DBs
Position
LG15:complement(21147892..21166895)
Genome browser
AA seq
937 aa
AA seq
DB search
MQSTIKSFFQPLTQIKSGKETAEKKQPEDKLTPKKEPIHSDQLVNGTTLQEDASEKCVAK
PTTQVLNGGGEEDSGKPGGKDTKAGDIKQESDCVPEQKTPVENISPSTSPVASNSPSPSS
IPRRRTARKQIPKRKVEEDVGCQDSAEEELCAKKRKTDGAGEGIKEEPDEKSMEVEDVKD
KDSEMVEVKTEKEEEAGEKKEEEPEEKKEEEPEEEKILTPSKPSSKSISSFFAPRKASVK
AEKKQILAVEENRPAQKSHIEVRSCESGKATGSSLNQSPTVAPADYNPTKSNYHPVHDAC
WGPGQRVPYLAVARTFEWIEEESARLKIIETLSNLFRSVIALSSEDLLPCVYLCLNRLGP
SYEGLELGIGKTILMKALAQATGRQLDQIKAEAAEKGDLGLVAESSRSTQGTMFAPPKLG
AAVVFGKLQAIGRMTGSSSMNKKIDIIKSLFVACRYSEARYVARSLEGKLRIGLAEQSVL
SALAQAASLTPPGQKFPPEILDASKGKSAEARKAWLDERALIVKQAFCELPNYDTIVPVL
LEHGIESLPQHCKITPGIPLKPMLAHPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILE
NGEVHIYSRNQENNTSKYPDIVSRIPKVKKSTVQSCIIDAEAVAWDPDSKQIQPFQVLTT
RKRKDVDAAEIRVQVCVYAFDILYLNGQSLVREPLTQRRTLLRDSFTEVEGQFLFATSMD
TSNTDEIADFLECSIKDSCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLV
VIGAYLGKGKRAGSYGGYLLACYDEENEEFQSICKIGTGFSDEDLEKIHASLKDHVIPQP
RPYYRWGGTVEPDHWLEAQHVWEVKCADLSISPVHKAAAGLVDEEKGISLRFPRFLRIRE
DKKPEEATASTQVAELYRKQQQIQNQQSVEKGDDDFY
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaccatcaaatcattcttccagcccctcacccaaataaagtctggaaaagaa
acagcagagaagaagcaaccagaagataagctaacccctaaaaaggaaccgatacattcc
gaccagttggtgaatggcacaactctccaggaagatgcctctgagaaatgtgtagccaaa
ccaaccactcaggtccttaatggtggaggtgaagaagattctgggaaaccaggaggaaag
gatacaaaggccggggatataaagcaggaatcggactgtgttcctgaacaaaagacacct
gtagagaacatctctccaagcaccagcccagttgcctctaattcaccctcaccttccagc
attccccgacgcagaactgcccgcaagcagatccctaaacgtaaagtggaggaagacgtc
ggctgccaagacagcgcggaggaggaactgtgtgccaaaaaacggaagacagatggtgct
ggggaaggcataaaagaggagccggacgagaagtcaatggaagtagaagatgtgaaagat
aaggattctgagatggtggaggttaagacagagaaggaggaagaagcaggggaaaagaag
gaggaagaaccagaggaaaagaaggaggaagaaccagaggaagagaagattctgacaccc
tccaagccatccagcaaatctatctctagtttttttgcccctaggaaagcttctgtgaaa
gcagagaaaaaacagatacttgcagtggaggaaaataggcctgcgcaaaagagccacatt
gaagtcagaagctgtgagtctggcaaagcaactggcagttctctcaaccagtctcccaca
gttgccccagcagattataaccccacaaagagcaactatcatcctgtccatgatgcttgt
tggggtcctggccagagggtaccatatctggctgtggcccgtacctttgagtggattgaa
gaggagtctgcccggctgaaaatcatagagactctgagcaacctgtttcgctctgtgatt
gctctgtcttctgaggacttgctgccctgcgtatacctttgcctcaatcgactaggcccg
tcatatgagggcttagagctgggcattggcaaaaccatcctcatgaaggccttggctcag
gccaccggtcggcagctggaccagatcaaggcagaggcagcagagaagggagacctgggt
ttggtggctgagagtagccgcagtacccagggcaccatgtttgctccacccaagcttggt
gctgctgttgtctttggcaagttacaggcaattgggcgcatgacaggaagctcttccatg
aacaagaagattgacattatcaagtccttgtttgttgcttgtcgctactcggaggctcgc
tatgttgctcgatcgttggaagggaagctgcggattggcctagcagagcagtctgtcctg
tcagccctggcccaggcagcgtcactgacgcctccaggacaaaaattccccccagagatt
ctcgacgcttcaaagggcaaatctgcagaggcccgcaaagcttggctggatgagagagcc
ttaattgttaagcaagccttctgtgaattgccaaattatgacactattgtgcctgtcctg
ctagagcatgggatagagagccttccgcagcattgcaagatcacaccagggatcccgttg
aagccaatgctggcccacccaaccaaaggcattggggaagtcttaaaacgctttgaggaa
gcagctttcacctgtgaatacaagtatgatggggaacgagcacagattcacattttggag
aatggggaagtgcacatttacagcaggaaccaagaaaataacacatccaagtatcctgac
attgtcagccgaattcccaaggtgaaaaaaagcaccgtgcagtcatgcatcatagatgct
gaggctgttgcttgggacccagattcaaaacagatccagcccttccaagtactgaccacc
cgcaagcgcaaggatgtggacgctgcagagatccgtgtgcaagtgtgcgtgtatgcgttt
gacattctctacctcaatgggcagtctttggtccgagaacccctcacccagcgccggact
ttgttgcgtgattctttcacggaggttgaaggccagttcctgtttgccacctccatggat
actagtaacactgatgaaatagcagatttcctggagtgctccatcaaagattcatgtgag
gggctaatggtcaaaacactggaagtggacgccacgtatgaaattgcaaagagatcccac
aactggctgaagcttaaaaaagattacctggatggtgttggggacacattagacctggtg
gtgattggtgcttacctgggcaagggcaaacgtgcaggcagctatggaggctacctctta
gcttgctatgatgaggaaaatgaggagttccagagcatctgcaagataggcactggattc
tcagatgaagacctggagaaaatccacgcttccctcaaggaccacgtgattccacagcca
cgtccgtactaccgttggggtggaacagttgagcctgatcattggctggaggcccaacac
gtctgggaagtgaagtgtgctgatttatccatttctcctgttcacaaagcagctgctggt
ttggtggatgaggaaaaaggaatttctctacgcttccccagattccttcgcattcgagaa
gataagaaaccagaagaggctactgctagcacccaggtggccgagctataccggaagcag
cagcagatccagaaccagcagtcagtggaaaaaggcgatgatgatttttactag
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