Salinispora tropica: Strop_3932
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Entry
Strop_3932 CDS
T00504
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stp
Salinispora tropica
Pathway
stp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Strop_3932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stp03021
]
Strop_3932
03400 DNA repair and recombination proteins [BR:
stp03400
]
Strop_3932
Enzymes [BR:
stp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Strop_3932
Transcription machinery [BR:
stp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Strop_3932
DNA repair and recombination proteins [BR:
stp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Strop_3932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABP56362
UniProt:
A4XBQ5
LinkDB
All DBs
Position
complement(4481199..4485092)
Genome browser
AA seq
1297 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAEARHRDLATIENEILAEKRQSENSRDSEIEKRAGKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALVQNMDLDAEAESLRETIRTGKGQRKIRALKRLKVVA
AFLNTSNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMIIGLYHLTHRTPGERGEGR
AFSSDAEARMAFDNGELHLQAPVKIRLRGLVGVESGPGAEPWTAPEGWVEGDPITVETTL
GRVLFNETLPPGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVLAPPRKREILGRYEKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVAKE
MDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQVGQQAGEA
GSLVVHEHAETSVHARTLADDIKGPDGTVVAERGADINSILVDKIVAAGVESVRVRSVLT
CESKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQ
GLPRVQEIFEARIPKGKAPIADTPGRVRIEDGERSRKIIVVPDDGSDEIAYDKISKRVRL
LANDGDHVEVGERLTVGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEII
IRQMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVSEGGEPAAGRPVLMGITKASLAT
DSWLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEE
AKAKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgcatcggcctcgccaccgccgacgacatc
cggcagtggtcccacggcgaggtcaagaagccggaaacgatcaactaccgcactctcaag
ccggagaaggacgggcttttctgcgagaagatcttcggtcctcagcgggactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgactcggtccaaggtccgccgggagcggatggggcacatcgagctggctgcctcg
gtgacccacatctggtacttcaagggcgtgccgagccggctgggttacctgttggatctt
gcccccaaggatcttgagaagatcatttacttcgcctcgtacgtggtgacgagcgtggac
gccgaggcgcgtcaccgggatctcgccaccatcgagaacgagattctcgccgagaagcgg
cagtccgagaacagccgggactcggagatcgagaagcgggctggcaagctcgaggccgac
ctcgccgagctggaggccgagggcgccaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgtgagatcgaccgcctggac
gaggtgctggacaccttccgcaagctggagccgaagcagctggtcaccgacgagttgctc
taccgggagctgcgcgaccggttcggcgagtacttcaccggtgggatgggggccgaggca
atcaaggccctggtccagaacatggacctcgacgccgaggcggagagcctgcgggagacc
atccgcaccggtaaggggcagcggaagatccgggcgctcaagcgactcaaggtggtcgcc
gcgttcctgaacaccagcaactcgccgctcggcatggtgctggactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgtcgggtgatcaaccggaacaaccgcctcaagcggctgatcgacctc
ggcgctcccgagatcattgtcaacaacgagaagcggatgcttcaggaggccgttgacgcg
ttgttcgacaacggtcgccgtggtcgaccggtcaccggtccgggtaaccgtccgctcaag
tcgttgtccgacatgctcaagggcaagcagggccggttccggcagaacctgctcggtaag
cgggtcgactactcgggtcgatcggtcatcgtggtcggtccgaagctcaagctgcaccag
tgcggcctgcccaagcagatggcgttggagctgttcaagccgttcgtgatgaagcggctg
gtggatctcaaccacgcgcagaacatcaagtctgccaagcggatggtcgagcggcagcgg
ccggtcgtctgggatgtcctcgaggaggtcatcggcgagcacccggtgctgctcaaccgg
gcgccgaccctgcaccgactgggtatccaggcgttcgagccgcagctggtcgagggcaag
gcgatccagattcacccgttggtctgcaccgcgttcaacgccgacttcgacggtgaccag
atggcggtccatgtgccgctgtcggccgaggctcaggccgaggcgcggatcctgatgctc
tcgtccaacaacatcctcaagccggccgacggcaagccggtgaccatgcccacccaggac
atgatcatcggtctctaccacctcacccaccgcactccgggtgagcggggtgagggccgg
gcgttcagctcggacgccgaggcgcggatggcgttcgacaacggggaactgcacctgcag
gcgccggtgaagatccgcctgcgcggtctcgtcggggtcgagagcggccccggtgccgag
ccgtggaccgcgccggagggctgggtcgagggtgacccgatcacggtggagacgacgctc
ggtcgggtcctgttcaacgagaccctgcctccgggctaccggttcgtgaactacgagatc
cgaaagggtcagctctccgcgatcgtcaacgacctcgccgagcgtttcccgaaggtcgct
ctcgcggccaccctggatggtctcaaggaggccggcttccactgggccacctggtccggc
gtgaccatcgggatggaggatgtccttgcgccgccgcgcaagcgggagatcctcggtcgg
tacgagaaggaagcggaccggatcgacaagcagtaccagcgtggtctgatgaccgccgag
gaacgtcgcggtgagctcatcgagatctggaccaaggcgaccaacgaggtcgccaaggag
atggacaccgcgctaccgcaggagaacccactctggaagatgatcaattcgggagcccgc
ggtaacctgctgcagctccggcagatcgccgcgatccgtggcttggtggcgaacccgaag
ggtgagatcatcccgcgtccgatcaaggcctcctaccgcgagggcctgtcggtactggag
tacttcatctccacgcacggtgcccgcaagggcctggcggacaccgccctgcgtaccgcc
gactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatcatccgcgag
gaggactgcggcaccgaccgggccattccgatgcaggtgggtcagcaggccggggaggcc
ggctcgctggtcgtgcacgagcacgcggagaccagcgtgcacgcccgtacgttggcggac
gacatcaaggggccggacggcaccgtcgtcgccgagcggggcgcggacatcaactcgatc
ctggtggacaagatcgtcgccgccggggtggagtccgtccgggtccgcagcgtgctcacc
tgtgagtcgaagctgggcgtctgcggggcctgctacggccgttcgctcccgaccggcaag
accgtggacgtcggcgaggcggttggcatcatcgccgcccagtcgatcggtgagccgggt
acgcagctcacgatgcgtaccttccacaccggtggtgtcgctggggaggacatcacccag
ggtctgccccgggtccaggagatcttcgaggctcgtatcccgaagggcaaggccccgatt
gcggacacccctggtcgggtccggatcgaggacggcgagcggtctcggaagatcattgtg
gtgccggacgacggcagtgacgagatcgcctacgacaagatctccaagcgggtccgactg
ctggccaacgacggcgaccacgtcgaggtcggcgaaaggctcaccgtgggtacgatcgac
ccgcacgagctgctccgcatcctgggtccgcgtgcggtccaggtccacctgacccaggag
gttcaggaggtctaccgctcgcagggtgtgctgatccacgacaagcacatcgagatcatc
atccggcagatgctcaagcgggtgacggtcatcgactccggctcgaccgagttcctgccg
ggcgtgctcgtggaccgggcgctgttcgagtcggagaaccgccgactcgtctccgagggc
ggcgagcccgccgctggccgtccggtgctgatgggtatcaccaaggcctctctggccacc
gattcctggctctcggcggcctccttccaggagaccacccgggtgctgacggacgcggcg
atccacgcccgcagcgactcgttgatcggtctcaaggagaacgtgatcatcggtaagctc
atcccggctggtactggcatcagcaagtaccgcaacgttcgggtcgagccgaccgaggag
gcgaaggccaaggtctactcgatgaccggttacccggagaccgattacggcttcggaccg
gccagtggccaggcggtcccgctggacgactttgacttcgggtcgtaccgctag
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integrated database retrieval system
