Salinispora tropica: Strop_3933
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Entry
Strop_3933 CDS
T00504
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stp
Salinispora tropica
Pathway
stp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Strop_3933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stp03021
]
Strop_3933
03400 DNA repair and recombination proteins [BR:
stp03400
]
Strop_3933
Enzymes [BR:
stp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Strop_3933
Transcription machinery [BR:
stp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Strop_3933
DNA repair and recombination proteins [BR:
stp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Strop_3933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ABP56363
UniProt:
A4XBQ6
LinkDB
All DBs
Position
complement(4485213..4488644)
Genome browser
AA seq
1143 aa
AA seq
DB search
MAASRPAKTSRTSSAFAPRRVSFGRITEHLEVPNLLAIQTESFDWLVGNEAWQGRSADDP
HARSGLAEILDEISPIEDFSGTMSLSFSAPRFDEVKASIEECKEKDLTYCAPLFVTAEFT
NNTTGEIKSQTVFMGDFPMMTPKGTFIINGTERVVVSQLVRSPGVYFDKQPDKTSDRDLS
SVKVIPSRGAWLEFDIDKRETVGVRIDRKRRQAVTVLLKAIGWTAEQIRERFGWSELMMT
TLEKDHIASQDEALLDIYRKLRPGEPPTRENAQTLLDNLFFNPKRYDVAKVGRYKFNKKL
ELDLSIDTGVLTQDDIVATVEYLCRLHAGEEGYEADDIDHFGNRRLRTVGELIQNQVRVG
LSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQTNPLAGLTHR
RRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGALSTFARVNPFGFI
ETPYRKVVDGRVTDQIDYLTADEEDRFVKAQANAPLRADGSFAEERVLVRRKGGETEDVP
PAAVDYMDVSPRQMTSVATAMIPFLEHDDANRALMGANMQRQAVPLVKAEAPLVGTGMEY
RAAVDAGDVVVAEFGGVVEDLCADYITVHQDDGHRRTYLLHKFRRSNAGSCVNQKPVVFE
GDRVEAGQVIADGPCTDDGEMALGRNLLVAFMTWEGHNYEDAIILSQRLVQQDVLTSIHI
EEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVVPGDVLVGKVTPKGET
ELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVRTFSREDGDELPPGVNELVRVY
VAQKRKIQDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIVLNPLGVPSRMNIGQVL
ETHLGWVAKTGWKVEGDDAEWKRQLQAISADESEPDSNVATPVFDGAREEEISGLLASTR
ANRDGKQLIGSSGKAQLFDGRSGEPLPDPIAVGYIYILKLNHLVDDKIHARSTGPYSMIT
QQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQELLTIKSDDVLGRVKVYEAIVKGENIP
EPGIPESFKVLLKELQSLCLNVEVLSSDGVALEMRETDDEVFRAAEELGIDLSRREPSSV
EEV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcttcccgccctgcgaagaccagtcgtacgtcgagcgctttcgctccccgccga
gtttctttcggtcggattaccgaacacctcgaggtccccaacctccttgccattcagacc
gagtcttttgactggctggtcggcaacgaggcctggcagggccggtcggcggacgatccg
cacgcgcgctcgggtctcgcggagattctcgacgagatcagtcccattgaggacttctcc
ggcaccatgtcactctccttctcggccccacgcttcgacgaggtcaaagcctcgatcgag
gagtgcaaggagaaggatctcacctactgcgccccgctcttcgtgaccgcggagttcacc
aacaacaccaccggcgagatcaagagccagacggtgttcatgggtgacttcccgatgatg
acgccgaagggcaccttcatcatcaacggtaccgagcgtgtcgtcgtcagccaacttgtc
cggtcgccgggtgtctacttcgacaagcagccggacaagacctccgaccgcgacctctcc
agcgtgaaggtcatcccgagccggggtgcctggctggagttcgacatcgacaagcgcgaa
accgtcggggttcgcatcgaccgtaagcgccggcaggccgtcaccgtgctgctcaaggct
atcggttggacggcggagcagatccgcgagcggttcggttggtccgagctgatgatgacc
acgctcgagaaggaccacatcgccagccaggacgaggcgctgctggacatctaccgcaag
ctgcgtccgggtgagccgccgacccgggagaacgcccagaccctgctcgacaacctcttc
ttcaacccgaagcggtatgacgtcgccaaggtcggccggtacaagttcaacaagaagctc
gaactggacctgtcgatcgacaccggggtgctcacccaggacgacatcgtggccaccgtt
gagtacctctgccggctgcacgccggggaggagggctacgaggccgacgacatcgatcac
ttcggtaaccgtcggctccgtaccgtgggcgagttgatccagaaccaggttcgggtcggc
ctgtcccggatggagcgggtcgttcgggagcggatgaccacgcaggacgtcgaggcgatc
acgccgcagactctgatcaacatccgcccggtggtggcggcgatcaaggagttcttcggc
acctcgcagctgtcccagttcatggatcagaccaacccgttggcgggcctgacccaccgg
cgtcggctgagtgctctcggccccggtggtctgtcccgggagcgggccggcttcgaggtc
cgcgacgtgcacccgtcgcactatggccggatgtgcccgatcgagacgccggaaggcccg
aacatcgggctgatcggtgcgctgtccacctttgcccgggtcaacccgttcggcttcatc
gagacgccgtaccggaaggtcgtggacggtcgggtcaccgaccagatcgactacctgacc
gcggacgaggaggaccgcttcgtcaaggcgcaggccaacgcgccgctgcgggcggacggc
tcgttcgccgaggaacgcgtcctggtccgtcgtaagggcggcgagaccgaggatgtgcct
ccggcggccgtggactacatggatgtgtcgccgcgtcagatgacctcggtcgcgaccgcg
atgatcccgttcctcgagcacgacgacgccaaccgcgcgctgatgggcgcgaacatgcag
cgtcaggcggtgccgctggtcaaggccgaggcgccgctggtcggcacgggcatggagtac
cgggccgcggtggacgccggtgacgtggtggtcgccgagttcggcggcgtggttgaggac
ctctgcgccgactacatcaccgtgcaccaggacgacggccaccgccgtacctacctgctg
cacaagttccgccgctccaacgccggctcctgcgtcaaccagaagccggtcgtgttcgag
ggtgaccgggtcgaggccggccaggtgatcgccgacggtccgtgtaccgacgacggcgag
atggcgctcggacgtaacctgctcgtggcgttcatgacctgggaaggccacaactacgag
gacgcgatcattctgtcgcagcgcctcgtgcagcaggacgtgttgacctcgattcacatc
gaggagcacgaggttgacgcccgggacaccaagcttggcccggaagagatcacccgtgac
atcccgaacgtcagcgaggagatgctcgccgacctcgatgagcggggcatcatccggatc
ggcgccgaggtcgttcccggcgacgtcctggtcggtaaggtcacgcccaagggtgagacc
gaactgacccccgaggagcggctgctccgcgcgatcttcggtgagaaggcgcgtgaggtc
cgggacacctcgctgaaggtgccgcacggcgagaccggcacggtcatcggtgtgcgtacc
ttctcccgcgaggacggcgacgaactgccgccgggcgtcaacgaactggtccgggtctac
gtcgcgcagaagcggaagatccaggacggcgacaagctcgccggccggcacggcaacaag
ggcgtcatctccaagatcctgccggtggaggacatgccgttcctcgaggacgggaccccg
gtcgacatcgtgctgaacccgctcggtgtgccatcccggatgaacatcggccaggtgctg
gagacgcacctcggttgggtggccaagaccgggtggaaggtcgagggcgacgacgccgag
tggaagcggcagctccaggcgatcagtgccgacgagtccgagcccgacagcaacgtggcc
accccggtcttcgacggtgcccgcgaagaggagatctccggtctgctcgcgtcaacccgg
gccaaccgggatggcaagcagctgatcggttcgtcgggcaaggcccagctcttcgacggt
cgctccggtgagccgctgccggacccgattgcggtcggctacatctacatcctgaagctc
aaccacctggtcgacgacaagattcacgcacggtcgaccggtccgtactcgatgatcacg
cagcagccgctgggtggtaaggcgcagttcggtggccagcgcttcggtgagatggagtgc
tgggcgatgcaggcgtacggtgccgcgtacgcgctgcaggagctgctgacgatcaagtcc
gatgacgtcctcggccgggtgaaggtctacgaggcgatcgtcaagggcgagaacatcccg
gagccgggcattccggagtcgttcaaggtgctactcaaggagcttcagtcgctctgcctc
aatgttgaggtgctctccagcgacggtgtggccctggagatgcgggagaccgacgacgag
gtgttccgggccgcggaggagctgggcatcgacctgtcccggcgcgagccgagctcggtc
gaagaggtgtga
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