Streptomyces sp. CCM_MD2014: NI25_05905
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Entry
NI25_05905 CDS
T04862
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
strd
Streptomyces sp. CCM_MD2014
Pathway
strd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
strd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NI25_05905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strd03400
]
NI25_05905
Enzymes [BR:
strd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NI25_05905
DNA repair and recombination proteins [BR:
strd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NI25_05905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIV38525
UniProt:
A0A0N6W6F3
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All DBs
Position
complement(1374290..1375204)
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AA seq
304 aa
AA seq
DB search
MRAGRRTVEVHRPDKVLFPAGAGGAEEPKEYTKGDLVDYHRAVAPFMLPHLRGRPLMLER
HPDGIDGPRFMQKNTPEHYPEWIERVEVGKEGGTVCHTVCDDSATLVYLADQAALTLHRW
LSRTAEIDRPDRMVFDLDPAGDDFEAVREAARLLAELLDELKLPSAPMTTGSRGLHVVVP
LDGCQDFDDVRDFARAVADVLAAAHPDRLTTAARKKDRGDRLYLDIQRNAYAQTAVAPFT
VRARPGAPVATPISWDQLDDPGLHARRWTIADAVEQARTRPWAGLTDRARALGPARRRLN
ALHD
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggccgggcgccgcaccgtggaggtccaccggccggacaaggtgctgttcccggcc
ggtgcgggcggcgccgaggagccgaaggagtacaccaagggcgatctcgtcgactaccac
cgggccgtcgccccgttcatgctgccccacctgcggggccgccccctgatgctggagcgg
cacccggacgggatcgacggaccgcggttcatgcagaagaacaccccggagcactacccg
gagtggatcgaacgcgtcgaggtcggcaaggagggcggcacggtctgccacaccgtctgc
gacgactccgccaccctcgtctacctcgccgaccaggccgcactcaccctgcaccgctgg
ctgtcccggaccgcggagatcgaccggcccgaccgcatggtcttcgacctcgacccggcc
ggagacgacttcgaggcggtccgggaggcggcccggctgctggcggaactgctcgacgag
ctgaagctgccctcggcgccgatgaccaccggctcccgggggctgcacgtcgtggttccg
ctggacggctgccaggacttcgacgacgtacgcgacttcgcgcgggccgtcgccgacgtc
ctggcagccgcccaccccgaccggctcaccaccgccgcccgcaagaaggaccgcggcgac
cggctctacctcgacatccagcgcaacgcctacgcccagaccgcggtcgcccccttcacc
gtgcgcgcccgccccggcgcccccgtggccacgcccatctcctgggaccagctggacgac
cccggtctgcacgcccggcgctggaccatcgcggacgccgtggaacaggcccggaccagg
ccctgggccgggctcacggaccgcgcccgggccctcggccccgcccggcggcggctgaac
gccttgcacgactga
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