Streptomyces sp. MOE7: STRMOE7_06835
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Entry
STRMOE7_06835 CDS
T05374
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stro
Streptomyces sp. MOE7
Pathway
stro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STRMOE7_06835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stro03400
]
STRMOE7_06835
Enzymes [BR:
stro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STRMOE7_06835
DNA repair and recombination proteins [BR:
stro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
STRMOE7_06835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARH90058
UniProt:
A0A1W5XJM9
LinkDB
All DBs
Position
complement(1521146..1522099)
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AA seq
317 aa
AA seq
DB search
MDDSDHGTHDHGGDDATRTVRAGRRTVRIHRPDKVLFPEDGLTKAEVVDYYGRVAAAMVP
QLRGRPLMLERLPEGLGGPHFMQKETPDHYPDWIRRAEVAKEGGTVTHPVCDDKATLLFL
ADQACLTLHRWLSRADRPDHPDRLVFDLDPPGADFEAVREAARALLGLLDELGLPAALMT
TGSKGLHVTVPLDRKSDFDTVRGFAQDTAEVLARRHPDRLTTAVRKKARGDRLYLDVQRN
AYAQTAVAPWSLRAEPGGPVAAPISHEQLDDPGLGAQRWSLRNVDGVLEQLRSAPWSAVP
GRGRSLTTARKRLDALS
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcggaccacggcacccacgaccacggcggggacgacgcgacgcgaacggtc
cgcgccggacgccgcacggtgcggatccaccggccggacaaggtgctcttccccgaggac
gggctgaccaaggccgaagtcgtcgactactacggccgggtggccgccgccatggtcccg
cagctccgcgggcgccccctgatgctggagcggctccccgaagggctcggcggcccgcac
ttcatgcagaaggagaccccggaccactaccccgactggatccggcgggccgaggtcgcc
aaggagggcggcaccgtcacccaccccgtctgcgacgacaaggccaccctgctgttcctc
gccgaccaggcatgcctcaccctgcaccgctggctgtcccgggccgaccgccccgaccac
ccggaccggctggtcttcgacctcgacccgcccggcgccgatttcgaggcggtacgcgag
gccgcgcgggcgctgctcggcctgctcgacgagctcgggctgccggccgcgctgatgacg
acggggtcgaaggggctgcacgtcaccgtccccctggaccgcaagagcgacttcgacacc
gtgcgcggcttcgcccaggacaccgcggaggtgctggcacggcgtcacccggaccggctc
accacggccgtacgcaagaaggcgcgcggtgaccggctctacctcgacgtgcagcgcaac
gcctatgcgcagaccgccgtcgccccctggtcgctgcgcgccgagccgggcggcccggtc
gccgcgccgatcagccacgaacagctcgacgaccccggactcggcgcgcagcgctggtcg
ttgcggaacgtcgacggcgtgctggagcagctgcggtcggcgccctggtccgcggtgccg
ggccgcgggcggtcactgaccaccgcccgcaagcggctcgacgcgctgagctga
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