Streptomyces sp. MOE7: STRMOE7_16170
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Entry
STRMOE7_16170 CDS
T05374
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stro
Streptomyces sp. MOE7
Pathway
stro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STRMOE7_16170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stro03400
]
STRMOE7_16170
Enzymes [BR:
stro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STRMOE7_16170
DNA repair and recombination proteins [BR:
stro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
STRMOE7_16170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARH91583
UniProt:
A0A1W5XNZ5
LinkDB
All DBs
Position
complement(3677761..3681321)
Genome browser
AA seq
1186 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVQAAADGHRRHVDLVGPPAARPFTIAALAREANRPVLAVTA
TGREAEDLAATLRSLMPAGEDNSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRA
DDPTAGPVSVVVAPIRSVLQPQVKGLGDLEPVSLRTGGTADLEEVVDALAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTEEVRTRAAALAERHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPAGS
MAVVCDPERVRTRAADLVATSQEFLQASWAASAGGGAAPIDVGAASLWGIADVRDRAREL
GMMWWSVSQFSAGDGAADDGPAAGDGDTLKLGMHAPDTYRGDTQRALADTKQWLADGWRT
VFLTEGHGPAARTVEVLGSEGIAARLDPDLPEISPSVVHVSCSSLDNGFVDPGLRLAVLT
ETDLSGQKAAGKDGARMPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATRE
YLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKE
IAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMD
RLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVKAL
SRFQTDTEAKAVLEGLRDGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLK
KLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQRQIGAAIR
RELLREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMGETQLEQVVVDFWEKKFD
VLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLT
ETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAV
ADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATTEEDIAAVR
EELTDRYGKLPEPVENLLLVAGLRMLARSCGVSDITLQGANIRFGPVELRESQELRLKRL
YPRTVLKPATRQILVPRPTTGKIGGKPLVGRELLAWVGEFLTTVLG
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtg
caggccgcggccgacggacaccgccggcacgtcgatctggtcggtccgccggccgcccgc
cccttcacgatcgccgccctcgcccgcgaggcgaatcgccccgtgctggcggtgaccgcc
accggccgggaggccgaggacctcgccgccacgctgcgcagcctgatgccggccggcgag
gacaactccgtcgtggagttcccgtcctgggagacgctgccgcacgagcggctctcgccg
cgctcggacaccgtcggccggcgcctcgcggtgctgcgccggctcgcccacccgcgcgcc
gacgacccgaccgccggcccggtctcggtggtcgtcgcgcccatccgttccgtgctccag
ccgcaggtcaaggggctgggtgacctggagccggtcagtctgcgcacgggcgggacggcc
gatctggaggaggtcgtcgacgccctggcggcggccgcgtacgcccgggtcgagctggtc
gagaagcgcggcgagttcgccgtccgcggcggcatcctggacgtcttcccgcccaccgag
gagcaccccctgcgggtggagttctggggcgacgacatcgaggagatccgctacttcaag
gtcgccgaccagcggtcgctggaggtcgccgagcacggcctgtgggcgccgccgtgccgg
gagctgctgctgaccgaggaggtccgcacccgggccgccgcgctcgccgagcgccatccc
gagctgggtgaactcctcggcaagatcgccgaggggatcgccgtcgaaggcatggagtcg
ctggctccggtgctggtcgacgagatggagctgctgctggacgtgctgccggcgggctcg
atggccgtcgtctgcgacccggagcgggtgcgtacccgggccgccgacctggtggcgacc
agccaggagttcctgcaggcgtcatgggcggccagcgcgggcggcggagcggcgccgatc
gatgtgggcgccgcctcgctgtggggcatcgccgacgtccgcgaccgggcccgcgagctg
ggcatgatgtggtggtcggtgagtcagttctccgccggtgacggcgcggcggacgacggg
ccggccgccggggacggcgacaccctgaagctgggcatgcacgcgcccgacacctaccgc
ggcgacacccagcgcgccctcgccgacaccaagcagtggctggccgacggctggcgcacg
gtcttcctcaccgaggggcacggccccgccgcccgtacggtcgaggtgctcggcagcgag
ggcatcgcggcccgcctggaccccgatctgcccgagatctcgccgtccgtcgtgcatgtc
tcgtgcagctcgctcgacaacggcttcgtcgaccccgggctcaggctcgccgtgctgacc
gagaccgacctctccggccagaaggcggccggcaaggacggcgcccggatgccggcccgc
cgccgcaagaccatcgacccgctcaccctggaggcgggcgacttcatcgtccacgagcag
cacggcgtcggccgctacatcgagatggtgcagcgcaccgtccagggcgccacccgcgag
tacctcctcgtcgagtacgcccccgccaagcgcggccagcccggcgaccgcctctacatc
cccaccgaccagctggagcaggtcaccaagtacgtgggcggcgaggccccgacgctgcac
cggctcggcggcgccgactggaccaagaccaaggcgcgcgccaagaaggcggtcaaggag
atcgccgccgacctcatcaagctctactccgcccgcatggcggcccccggccacaccttc
ggcccggacacgccctggcagcgcgagctggaggacgccttcccgtacgcggagacgccc
gaccagctcaccaccatcgccgaggtcaaggaggacatggagaagtcggtcccgatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtccgcgccgcgttc
aaggccgtgcaggacggcaagcaggtggccgtcctcgtgcccacgaccctgctggtgcag
cagcacttcggcacgttctccgagcggtacggacagttcccggtgaacgtgaaggcgctg
tcccgcttccagaccgacaccgaggccaaggccgtcctggagggcctcagggacggcgcc
gtcgacatcgtcatcggcacccaccgcctcttctcctccgagaccaagttcaaggacctc
ggcctggtcatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaag
aagctccgcgccaacgtcgacgtcctcacgatgtccgccacgcccatcccgcgcaccctg
gagatggcggtcaccggcatccgcgagatgtcgacgatcaccaccccgcccgaggaacgc
cacccggtcctgaccttcgtcggcccctacgagcagcggcagatcggcgcggccatccgc
cgtgaactcctgcgcgagggccaggtcttctacatccacaaccgcgtcgagtcgatcgac
cgcgccgccgcccggctgcgcgagatcgtccccgaggcccggatcgccaccgcgcacggg
cagatgggcgagacgcaactggagcaggtcgtcgtcgacttctgggagaagaagttcgac
gtcctggtgtcgacgaccatcgtcgagtccggcatcgacatctccaacgccaacaccctc
atcgtcgagcgcggcgacaacttcggcctctcccagctgcaccagctgcgcggccgggtc
ggccggggccgcgagcgcggctacgcctacttcctctatccgccggagaagccgctcacc
gaaaccgcccacgagcggctggccaccatcgcccagcacacggagatgggcgccggcatg
tacgtcgccatgaaggacctggagatccgcggcgccggcaacctcctcggcggcgagcag
tccggccacatcgcgggtgtcggcttcgacctgtacgtccgcatggtcggcgaggcggtc
gccgactaccgcgcctccctcgaaggcggcgtggaggaggaaccgcccctcgaagtcaag
atcgaactcccggtggacgcgcacgtcccgcacgactacgcgccgggcgagcgcctccgc
ctccaggcgtaccgggccatcgcctcggccacgacggaggaggacatcgccgccgtccgc
gaggaactcaccgaccgctacggcaagctgccggagccggtggagaacctcctcctggtc
gccgggctgcgcatgctcgcccgctcctgcggcgtctccgacatcaccctccagggtgcc
aacatccgcttcggcccggtggaactgcgcgagtcccaggaactccgcctcaagcggctc
tatccccgtacggtcctcaagccggccacccgccagatcctggtcccccgccccacgacg
ggcaagatcggcggcaagccgctggtgggacgggaactcctcgcctgggtgggcgagttc
ctcacgacggtcctgggctga
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