Streptomyces sp. PAMC 26508: F750_5989
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Entry
F750_5989 CDS
T02619
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strp
Streptomyces sp. PAMC 26508
Pathway
strp03030
DNA replication
strp03410
Base excision repair
strp03420
Nucleotide excision repair
strp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F750_5989
03410 Base excision repair
F750_5989
03420 Nucleotide excision repair
F750_5989
03430 Mismatch repair
F750_5989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strp03032
]
F750_5989
03400 DNA repair and recombination proteins [BR:
strp03400
]
F750_5989
Enzymes [BR:
strp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F750_5989
DNA replication proteins [BR:
strp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F750_5989
DNA repair and recombination proteins [BR:
strp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F750_5989
NER (nucleotide excision repair)
GGR (global genome repair) factors
F750_5989
MMR (mismatch excision repair)
DNA ligase
F750_5989
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F750_5989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
PTCB-BRCT
HHH
UPF0758_N
Cas_Csd1
DNA_ligase_ZBD
BRCT_2
DUF3138
Motif
Other DBs
NCBI-ProteinID:
AGJ58417
LinkDB
All DBs
Position
6380409..6382529
Genome browser
AA seq
706 aa
AA seq
DB search
MVDGRMVPMTTNSAGPLADTAAYAAAVEEAERAAAAYYTAGESTLDDDAYDRLVRAIAAY
EEEHPQEVLDASPTGKVAGGAVSGDVPHTVPMLSLDNVFSAEQFVTWTASVERRIGRPVA
AWSVEPKLDGLAVAARYRQGVLEQLITRGDGTAGEDVSHAIGTVLGLPERLGAPATLEIR
GEILMTTEQFEAANAVRTEHGAAPFANPRNGAAGTLRAKDRPYRVEMTFFAYGALALPDS
GELTDTLAGLPHSEVLEYVARIGVHTAADTAVAPRTVTTVEEVQAGVEDIAALRASLPFG
IDGIVIKADLAADQRDAGSGTRAPRWAIAYKLPAVEKVTRLLGVEWNVGRTGIIAPRAVL
EPVEIDGSTVSYATLHNPADITRRDLRLGDHVMVYKAGDIIPRIEAPVAHLRTGEEQPIE
FPEACPRCGSEIDASEQRWRCTRGRDCRLVASISYAAGRDQLDIEGLGTTRVVQLVDAGL
VQDFADLFTLERDQLLSLDRMGETSTDNLLAAIGTAASRPLSRVFCALGVRGTGRSMSRR
IARHFASMDRIAAADVEALQQVDGIGKEKAAAVVRELQELAPLIGKLVAAGVNMTEPGAT
PPPEPGAAQEGEAEESATSGLPLAGMTVVVTGAMTGALEKLSRNEMNELIERAGGKSSSS
VSKRTSLLVAGEKAGSKRTKAEDLGVRIAAPEEFAELVEAHLAVEV
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtggtggacggcaggatggtgcccatgacgacgaactcagctggtccgctcgccgacacg
gccgcctacgcagccgcggtggaagaggccgaacgcgccgcggccgcgtactacaccgca
ggtgagagcacgctcgacgacgacgcgtacgaccggctggtgcgcgcgatcgccgcatac
gaggaggagcacccgcaggaggtgctggacgcctcgccgacgggcaaggtcgccggtggg
gcggtctcgggcgacgtgccgcacaccgtgccgatgctctcgctggacaacgtgttctcc
gccgagcagttcgtcacctggaccgcttccgtggaacggcgtatcgggcggcccgtcgcg
gcctggagcgtggagcccaagctcgacggtctggccgtcgccgcgcgctaccggcagggc
gtactcgagcagctgatcacccggggcgacgggacggccggcgaggacgtctcccacgcg
atcgggacggtgctggggctccccgagcggctcggcgctcccgccacgctcgagatacgc
ggcgagatcctcatgaccaccgagcagttcgaggcggcgaacgcggtgcgcacggagcac
ggcgccgcccccttcgccaacccgcgcaacggcgcggccggcaccctgcgggccaaggac
cgcccctaccgcgtggagatgacgttcttcgcgtacggcgcgctcgcgctgcccgactcc
ggtgaactgacggacaccctggccggactcccgcacagcgaggtcctggagtacgtcgcc
aggatcggggtgcacaccgccgccgacaccgcggtcgccccgcgcaccgtgaccacggtc
gaggaggtccaggcgggggtggaggacatcgccgcgctgcgcgcctcgctgcccttcggt
atcgacggcatcgtgatcaaggcggacctggccgccgaccagcgtgacgcgggctccggg
acgcgcgcgccccgctgggccatcgcgtacaagctcccggccgtcgagaaggtcacccgg
cttctgggcgtcgagtggaacgtcggcaggaccggcatcatcgcgccgcgcgccgtgctg
gagcccgtcgagatcgacgggtcgaccgtcagctacgccacgctgcacaaccccgcggac
atcacacgccgggatctgcggctgggcgaccacgtgatggtctacaaggcgggcgacatc
atcccccgcatcgaggcgcccgtcgcgcacctgcggacgggggaggagcagccgatcgag
ttccccgaggcctgtccccggtgcggttcggagatcgacgcgagcgagcagcgctggcgc
tgcacccggggccgcgactgccgcctggtcgcctccatctcctacgcggcgggccgtgac
cagctggacatcgaagggctcggcaccacccgggtcgtccagctcgtcgacgccggtctc
gtccaggacttcgccgatctcttcacgctggagcgcgaccagctgctctccctggacagg
atgggggagacctcgacggacaacctgctggcggccatcgggaccgccgcgagccgtccg
ctgtcccgcgtcttctgtgcgctcggcgtgcgcggcacgggccgctccatgtcccggcgg
atcgcccgccacttcgcctcgatggaccggatcgccgccgccgacgtggaggcgctgcaa
caggtcgacggcatcggcaaggagaaggccgcggcggtcgtcagggaactgcaggagctc
gcgccgctgatcggcaagctggtggcggccggggtcaacatgacggagcccggtgccacc
ccgccgccggagcccggggccgcgcaggagggggaggccgaggagtccgcgacgtccgga
ctgccgctcgccggtatgacggtcgtggtgaccggagccatgaccggggccctggagaag
ctctcgcgcaacgagatgaacgagctgatcgagcgcgccggaggcaagtcctcctccagc
gtctccaagcgcaccagcctgctcgtcgccggggagaaggcgggttccaagcggaccaag
gccgaggatctcggtgtccggatagccgcacccgaggaattcgccgagctcgtggaggcg
catctcgccgtggaggtgtga
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integrated database retrieval system
