Streptomonospora litoralis: EKD16_11795
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Entry
EKD16_11795 CDS
T05863
Symbol
ykoU3
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
strr
Streptomonospora litoralis
Pathway
strr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
strr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EKD16_11795 (ykoU3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strr03400
]
EKD16_11795 (ykoU3)
Enzymes [BR:
strr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EKD16_11795 (ykoU3)
DNA repair and recombination proteins [BR:
strr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EKD16_11795 (ykoU3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBI54142
UniProt:
A0A4V0ZJN9
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All DBs
Position
2660573..2661487
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AA seq
304 aa
AA seq
DB search
MNADAQERRVGRHRVRISRPGKELFEPGGPTKLELADHYRAVAEPMLRHLRGRPLALQRY
PHGIGDPAGGFYVKNRPSHAPVWAGAVRVPSRDGDSATEMLVCDDAATLVWLADQAAITL
HPWLSRTGRLHTPDRLIIDLDPPGDDFAAVRRAAADVREVLEGLGLAAFVMTTGSRGLHV
VAPIRPEIDAAQARDFAHVIAELTARRRPDELTTVFRKRRRGERLFLDYLRNGYAQLAVA
PYSVRALPGAPVATPLSWEELERVDSARTWTVRTFGDRAGAEPWRDMARHARSPRRAIER
LDVG
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgccgacgcgcaggagcggcgggtgggccggcaccgggtgcgcatcagccgcccc
ggcaaggagctgttcgagccgggcgggcccaccaagctcgaactcgccgaccactaccga
gcggtcgccgagcccatgctgcggcacctgcgcgggcgccccctggcgctgcagcgctac
ccgcacggcatcggcgatcccgcaggcgggttctacgtcaagaaccggccctcccacgcc
cctgtgtgggccggtgcggtgcgggtgcccagccgcgacggcgactcggccaccgagatg
ctcgtctgcgacgacgccgcgaccctggtctggctcgccgaccaggccgccatcaccctg
cacccgtggctgagcaggaccggacggctgcacacccccgaccggctgatcatcgacctc
gacccgcccggcgacgacttcgcggccgtgcgccgcgccgccgccgacgtccgcgaggtg
ctggaagggctggggctggccgcgttcgtcatgacgaccggttcccgcggcctgcacgtg
gtggcgcccatccgccccgagatcgacgcggcccaggcacgcgacttcgcccatgtcatc
gccgagctgaccgcgcgccgccgccccgacgagctgaccaccgtcttccgcaagcggcgc
cgcggcgagcggctgttcctggactacctgcgcaacggctacgcccagctggcggtcgcg
ccctactcggtacgggccctgcccggcgctccggtggcgaccccgctttcatgggaggag
ctggagcgggtggactcggcgcggacgtggacggtgcgcaccttcggcgaccgcgccggt
gccgagccctggcgcgacatggcgcgccacgcccgatcgccgcgccgcgccatcgaacgc
ctggacgtcggctga
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