Streptomonospora litoralis: EKD16_20260
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Entry
EKD16_20260 CDS
T05863
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
strr
Streptomonospora litoralis
Pathway
strr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
strr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKD16_20260 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strr03400
]
EKD16_20260 (mfd)
Enzymes [BR:
strr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKD16_20260 (mfd)
DNA repair and recombination proteins [BR:
strr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EKD16_20260 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBI55814
UniProt:
A0A4P6Q9B7
LinkDB
All DBs
Position
4704799..4708410
Genome browser
AA seq
1203 aa
AA seq
DB search
MSLFGLLEVVSDDPALSQAVETARTGHDPRLDLVAPPSLRPFVIAALAADAPAGAERPVL
AVTATEREAGDLAEALGSLLPQNSVALFPAWENLPHERLSPRSDTVGQRLAVLRRLAHPD
PADPLTAPLRVVVAPVRSVLQPLVAGLGDLTPVRVRQGDEAGLEDVVQSLVDAGYARTDL
VEKRGDIAVRGGILDVFPPTEEHPLRLEFWGDEVEEIRYFQVADQRSIAEGSEAEAASGL
FAPPCRELLLTPQVRERARVLAEQHPSLAEVLGKLADGVAVEGMEAFAPVLADRMEPLFS
YLPEGAHIVGCDPERIRTRALELEATSREFLDASWINAASGGEAPIDLGGSAYKSIAEVR
ADADALGLPWWSISPFDSGSAPAAPEGAAGETDDFGGEGGLELGAAAADTYRGDTERALA
DVKSWLHDSWSVVLLTPGHGPAERLVSMLRDAGLGAQLRTEVDSAPDRAVATVATGLIEH
GFVWRSVRLVVLTETDLAGQRSSTRDMRRMPSRRRGTVDPLQLKSGDHVVHEQHGVGRYI
EMVSRTIQGATRDYLVIEYAASKRGQPGDRLFVPTDQLDEVTRYVGGEAPTLSKMGGADW
AKTKSRARKAVREIAGDLIRLYSARQASPGHAFGADTPWQRELEDAFPYAETPDQLAAIE
EVKRDMEKSVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVALLVPTTLLVQQHMSTFS
ERYASFPVTVKPMSRFQTEGEVEATREGLRKGEIDIVIGTHRLLSSETKFKNLGLVVIDE
EQRFGVEHKETLKRLRTQVDVLAMSATPIPRTLEMGMTGIREMTTILTPPEERHPVLTFV
GPYEEKQIAAAVRRELMREGQVFFVHNRVASIEKVAASISSLVPEARVAYAHGQMNEQQL
ERVMIDFWEKNYDVLVSTTIVESGLDVPNANTLIVDRADTYGLSQLHQLRGRVGRGRERA
YAYFLYPPERPLSETAHERLATVAQHTETGAGMYVAMKDLEIRGAGNILGAEQSGSIAGV
GFDLYVRMVGEAVRELKGDAGAGEEEPETKVELPIDAHIPHDYVPGERLRLQAYKRIAGV
TSDAEIAAAREELVDRYGPPPQPVDNLLAVARFRVLAKNAGLTDVVLQGSQIRFAPVELR
ESQRLRLRRLYPKAVYKEPAQTLLVPAPKAGGLGGRQLRDLELLTWCSELVEALFEPAKQ
TQQ
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcttcggactcctggaagtcgtctccgacgacccggcactcagccaggcggtc
gaaaccgcccggaccggccatgacccccgactcgacctcgtcgcgccgccgtcgctgcgc
ccgttcgtgatcgcggccctggccgccgacgcccccgcgggcgccgagcgcccggtgctg
gcggtcaccgccaccgagcgcgaagccggcgacctcgccgaggcgctggggtcgctgctg
ccgcagaactcggtcgcgctgttccccgcctgggagaacctgccgcacgagcgcctctcg
ccccgttccgacaccgtcgggcagcggctggccgtgctgcgccgtctggcccaccccgat
ccggccgacccgctgaccgctccgctgcgtgtcgtggtggcaccggtacgcagcgttctg
cagccgctggtcgccgggctgggcgacctcaccccggtgcgcgtgcgccagggtgacgaa
gccgggctggaggacgtcgtgcagtcgctggtcgacgccggctatgcgcgcaccgacctg
gtcgagaagcgcggcgacatcgcggtgcgcggcggcatcctggacgtctttccgcccacc
gaggagcatccgctgcggctggagttctggggcgacgaggtcgaggagatccgctacttc
caggtcgccgaccagcgctcgatcgccgaaggctccgaggccgaggccgcctccggcctg
ttcgcgccgccgtgccgggagctgctgctgaccccgcaggtgcgcgagcgcgcccgcgtg
ctggccgagcagcacccgtccctggccgaagtactgggcaagctcgccgacggcgtcgcg
gtcgagggcatggaggcgttcgcccccgtgctggccgaccggatggagccgctgttctcc
tacctgcccgagggcgcgcacatcgtcggctgcgaccccgagcggatccgcacccgcgcc
ctcgaactggaggccaccagccgcgagttcctcgacgcctcctggatcaacgccgcttcg
ggcggcgaggcgcccatcgacctgggcggctcggcctacaagtcgatcgcggaggtgcgc
gccgacgccgacgcgctgggcctgccgtggtggtcgatctcgccgttcgactccggctcg
gcgccggccgcgcccgagggcgccgcgggcgagaccgacgacttcggcggcgaaggcggc
ctggagctgggcgccgcggccgccgacacctaccgcggcgacaccgagcgcgccctggcc
gacgtcaagtcgtggctgcacgacagctggagcgtcgtgctgctcacccccggccacggc
cccgccgagcgactggtgtccatgctgcgcgacgccgggttgggggcccagctgcgcacg
gaggtcgactccgcgcccgaccgggccgtggcgaccgttgccaccgggctgatcgagcac
ggcttcgtgtggcgctcggtgcgcctggtcgtgctgaccgagaccgacctggcgggccag
cgctcttccacccgcgacatgcgccgcatgcccagccgacgccgcggcacggtcgacccg
ctccagctgaagtcgggtgaccacgtcgtccacgagcagcacggtgtgggccgctacatc
gagatggtcagccgcaccatccagggcgccacccgcgactacctcgtcatcgagtacgcc
gccagcaagcgcggccagcccggcgaccggctgttcgtgcccaccgaccagctcgacgag
gtcacccgctacgtcggcggcgaggcccccactctgtccaagatgggcggggccgactgg
gccaagaccaagagccgcgcccgcaaggcggtgcgcgagatcgccggcgacctcatccgg
ctctacagcgcccgccaggcgtcgcccggccacgccttcggtgccgacaccccctggcag
cgcgagctggaggacgcgttcccctacgccgaaacccccgaccagctcgccgcgatcgag
gaggtcaagcgggacatggagaagtcggtcccgatggaccggctcatctgcggcgacgtc
ggctacggcaagaccgaggtcgcggtgcgcgccgcgttcaaggccgtgcaggacggtaaa
caggtggcgctgctggtgccgaccacgctgctcgtgcaacagcacatgtcgaccttcagc
gagcgctacgcctcgttcccggtcactgtgaagcccatgtcccgcttccagaccgagggc
gaggtcgaggccacccgcgaggggctgcgcaagggcgagatcgacatcgtgatcggcacg
caccgcttgctctccagcgagaccaagttcaagaacctggggctggtggtcatcgacgag
gagcagcgcttcggcgtcgagcacaaggagaccctgaagcggctgcgcacccaggtcgac
gtactggcgatgtcggccacacccatcccccgcacgctggagatgggcatgaccggcatc
cgcgagatgacgaccatcctcactccgccggaggagcggcaccccgtgctgaccttcgtc
gggccctacgaggagaagcagatcgccgcggcggtgcggcgggagctgatgcgcgagggc
caggtgttcttcgtgcacaaccgggtggcctcgatcgagaaggtcgcggcgtcgatcagc
agcctggttccggaggcccgggtcgcctacgcacacggccagatgaacgagcagcagctc
gaacgcgtgatgatcgacttctgggagaagaactacgacgtgctggtctccaccacgatc
gtggagtcggggctggacgtgcccaacgccaacacgctgatcgtcgaccgcgccgacacc
tacggcctgtcccagctgcaccaactgcgcggccgggtggggcgcggccgcgagcgggcc
tacgcctacttcctgtacccgccggagcgcccgctgagcgagaccgcccacgagcggctg
gcaacggtcgcccagcacaccgagaccggtgccggcatgtacgtggcgatgaaggacctg
gagatccgcggcgccggcaacatcctgggcgccgagcagtccggcagcatcgcgggggtc
gggttcgacctgtatgtgcgcatggtcggtgaggccgtgcgcgagctgaagggtgatgcc
ggcgcgggcgaggaggagcccgagaccaaggtcgaactgcccatcgacgcccacatcccg
cacgattacgtgcccggcgagcggctgcggttgcaggcgtacaagcgcatcgccggggtc
accagcgacgccgagatcgccgccgcgcgcgaggagctggtcgaccgctacggcccgcca
ccgcagccggtggacaacctgctcgcggtcgcgcggttccgggtgctggccaagaacgcc
gggctcaccgatgtcgtactgcaaggcagccagatccggttcgcgccggtcgagctgcgc
gagtcccagcggctgcggctgcggcggctctaccccaaggccgtctacaaggagccggcc
cagacgctgctggtgccggcacccaaggcgggcggcctcggtgggcgccaactgcgtgac
ctggaactgctgacctggtgctcggagctggtcgaggccctcttcgaacccgcgaagcag
acccagcagtag
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integrated database retrieval system
