Streptomyces sp. SAT1: A8713_12630
Help
Entry
A8713_12630 CDS
T04706
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
strt
Streptomyces sp. SAT1
Pathway
strt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
strt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A8713_12630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strt03400
]
A8713_12630
Enzymes [BR:
strt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8713_12630
DNA repair and recombination proteins [BR:
strt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A8713_12630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ANH91904
UniProt:
A0A1A9IZE2
LinkDB
All DBs
Position
complement(2923920..2927468)
Genome browser
AA seq
1182 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAITAATDGNRMHVDLVGPPAARPLAIAALARESGRPVLAVTA
TGREAEDLAAALRSLLPEEGVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGESADLNAVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEDVRARARALAERHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGALAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADESAYGTEGDGDTLKLGMHAPDTYRGDTAKALADTKGWLAEGWRTVFVTEG
HGPAARTVEVLGGEGIAARLDTDLGAVSPSVVHVACGCIDHGFVDPGLKLAVLTETDLTG
QRTAGRDGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEY
APAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLI
KLYSARMAAPGHSFGTDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGD
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVKVKALSRFQTD
TEAKAVLEGLREGSVDVVIGTHRLFASETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANV
DVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLRE
GQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKRFDVLVSTT
IVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHER
LATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQ
LETGEIEEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELTD
RYGKLPEPVENLLLVAGLRMFARACGVGEIVLQGANIRFAPVELRESQELRLKRLYPGAL
LKPAAHQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLGS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgatc
accgcggccacggacggcaatcgcatgcacgtcgacctcgtcggcccgcccgcggcccgc
cccctggcgatcgccgcgctggcccgcgagtccggccgcccggtgctcgcggtgacggcg
accggccgcgaggccgaggacctggcggccgccctgcgctcgctgctcccggaggagggc
gtcgcggagtacccctcctgggagacactgccgcacgagcggctcagcccgcgcagcgac
accgtgggccgtcgcctggccgtgctgcgccgcctggcgcatccgcggcccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcccccgtgcgctcggtgctccagccgcaggtc
aagggcctgggcgacctggagcctgtctccctgcgcaccggcgagagcgccgacctgaac
gcggtggtggaagccctggccgccgccgcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggcctgtgggccccgccctgccgcgagctgctg
ctcaccgaggacgtccgcgcccgcgcgcgtgccctggccgagcgccacccggagctgggc
gagctgctcggcaagatcgccgagggcatcgcggtggagggcatggagtccctggccccg
gtcctcgtcgacgacatggaactgctgctggacgtgctgcccaagggcgccctggccgtg
gtgtgcgacccggagcgggtgcgcacccgcgcctccgacctggtggccacctcgcaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgaggcccccatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtccgggaccgggcgcgcgagctggacatgatg
tggtggtccgtctcgcccttcgcggccgacgagagcgcctacggcaccgagggcgacggc
gacaccctcaagctgggcatgcacgcgcccgacacctaccgcggcgacaccgccaaggcg
ctcgccgacaccaagggctggctggccgagggctggcgcaccgtcttcgtcaccgagggc
cacggcccggccgcccgcacggtggaggtgctgggcggcgagggcatcgccgcccgcctg
gacacggacctcggggcggtgtccccgtccgtggtgcacgtggcgtgcggctgcatcgac
cacggcttcgtcgaccccggcctgaagctggccgtgctcaccgagaccgacctgaccgga
cagcgcaccgccggccgggacggcgcccgcatgccggcccgccgccgcaagaccatcgac
ccgctcaccctggaggcgggcgactacatcgtgcacgagcagcacggcgtgggccgctac
atcgagatggtgcagcgcaccgtgcagggcgccacccgcgagtatctggtggtggagtac
gccccggccaagcgcggccagcccggcgaccgcctctacatccccaccgaccagctggag
cagatcaccaagtacgtcggcggcgaggcccccacgctgcaccggctcggcggcgccgac
tggaccaagaccaaggcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctgatc
aagctgtactccgcccggatggccgcccccgggcactccttcggcaccgacactccctgg
cagcgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctgaccaccatc
gccgaggtcaaggaggacatggagaagtcggtcccgatggaccgcctgatctgcggcgac
gtggggtacggcaagacggagatcgcggtccgcgccgccttcaaggccgtccaggacggc
aagcaggtcgcggtcctggtccccaccaccctgctggtccagcagcacttcggcaccttc
tccgagcgctacgcgcagttcccggtgaaggtgaaggcgctctcccgcttccagaccgac
accgaggcgaaggcggtcctcgaagggctgcgcgagggctcggtcgacgtcgtcatcggc
acccaccggctgttcgcctccgagaccaggttcaaggacctgggcctggtcatcgtcgac
gaggagcagcgtttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtc
gacgtgctgacgatgtccgcgaccccgatcccgcgcaccctggagatggcggtcaccggc
atccgcgagatgtccacgatcaccaccccgcccgaggagcgccacccggtgctgaccttc
gtcgggccgtacgaggagaagcagatcggcgcggccgtccgccgcgaactgctgcgcgag
ggccaggtcttctacatccacaaccgggtggagtccatcgaccgggccgccgcccggctg
cgcgagatcgtgcccgaggcgcggatcgccaccgcccacggccagatgtccgaacaggcc
ctggaacaggtcgtcgtggacttctgggagaagcggttcgacgtgctggtctccacgacg
atcgtcgagtccggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgac
aacttcggcctctcccagctgcaccagttgcgcggccgggtgggccgcggccgcgagcgc
ggctacgcctacttcctctacccgccggagaagccgctcaccgagaccgcgcacgagcgg
ctggcgaccatcgcccagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggac
ctggagatccgcggcgccggaaacctgctgggcggcgagcagtccggccatatcgcgggc
gtcggcttcgacctgtatgtgcggatggtcggcgaggcggtggcggactaccggcggcag
ctggagaccggtgagatcgaggaggaggcgccgctggaggtcaagatcgagctcccggtc
gacgcgcacgtcccgcacgactacgcgcccggcgagcggctgcgcctccaggcgtaccgg
gccatcgcctcggccaattcggaggaggacatcaaggccgtccgcgaggagctgaccgac
cgttatggcaagctgcccgagccggtggagaacctgctgctggtggccgggctgcggatg
ttcgcccgcgcctgcggggtcggtgagatcgtgctccagggcgccaacatccgcttcgcg
ccggtggagctgcgcgagtcccaggagctgcgcctgaagcggctctacccgggcgcgctg
ctcaagccggccgcccaccaggtgctcgtcccgcgccccaagaccgcgaaggtcggcggc
aagccgctggtcggccgggaactgctggcctgggtgggcgagttcctgacctccgtgctc
gggtcgtaa
DBGET
integrated database retrieval system