Salmo trutta (river trout): 115154987
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Entry
115154987 CDS
T08542
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115154987 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115154987 (pcf11)
03019 Messenger RNA biogenesis [BR:
stru03019
]
115154987 (pcf11)
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115154987 (pcf11)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115154987 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
115154987
NCBI-ProteinID:
XP_029557610
Ensembl:
ENSSTUG00000004292
LinkDB
All DBs
Position
19:53994180..54025837
Genome browser
AA seq
1698 aa
AA seq
DB search
MDCLVINGYVSDKIGLVFDRSDIAKMDDAAREDACREYQSSLEDLTFNSKPHINMLTILA
EENLHFAKDIVAIIEAQITKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLVTSFICVF
EKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSHDPAWPIKALPPTVNASIHVNPKF
LKHPEEVTSPRALSPAPLVRAPAPAPQPAVVPSVSEKSITQEQVIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLSCPSFTFQAANVVLSTPAIVPKATLPPSVIKPCIPPVSDPKPPTR
DPRLNRAGPGAPQAKESTSHKKEGHVMGGPAHTPEKQLPERPGRPERTRPPKKELLEVKT
KSKSLSPMAKGVLGKSKHYEAENVKTTADAPGKKDPRLRKHLHDKADPKEEVKEKKKCTD
KDKEMDEAVMKASGRGKMANGSVSKPEREKPEPVEKPENQIRGNARTNARKRSRSPSLHL
HSPKRKTERRSPKRRARSISPSPPLHKPGKGGRQSGGKHSSHHEDFPQHGTTREERVTPK
KSSSEPRRTKRPAEERPVEARDTHSSPRTTSEGKETKENAKRWRSGWEENKHLKLSSEEA
HGKGAGPPQRRPSYSSSKRPTTPKQHRLSVDANLQIPEVLHSASKRDLLKKASKHLENGE
ISHDDFLNVAHQIKQLFQYQEEKQRGGDSWEGSSEDGHGHAHPHHLPPTRKKPLLATPTG
GVSSGADLSDAELTYYEHKSKLRRTQVMLWQQEQGGEGWDGEDSQEEVEGVLGRPGEGPG
GAKTEVNRETNTLPSGMKFTRLPKDRLKEVEEEQPTPAAIIQEYSHGNEFPRLKSLPGLR
FRRIQDPRESTATDRLKAGERERNSPLSERLPNHRPPYDEREEPKSGYNAPPRRYGGGPL
SEDHSVKPPYPRYDDPRKHERIAPKPPSGPVLQNSVSLALDGPIRKSPVPLPAPAYERER
LSPLQQMDAAEMSPVPRFESPNSEHSCEEGPLDTPPLPRPHHPGGPPRGPALSLVRSKHG
ESPGHTPPHTADGPQRYDGGPKGGPPSPRYDGPHKGTQSGYDGPGHIGQPGRPHPGGRYE
GVQGPGRYDGPGCSSHGPSRYDGPYPQGPGRFDGPPLHKGPEKFDGPGRYDGPSMPHVPM
RGDPQGIGGRFDGGPPPPQQGRPSGRYDSRFDGQGPGPMRFDGPMQSNRFDGPMNFNNSH
MQPGPGRFEGLMRFQQGPMRFDGAPNQPGPMRFDGPVNPSTPMGQPGPMRYDPLPSLPPQ
GMPPRFDCPSGQQVSPRYHATPNLQPPLRPLGTPMYDPVNPGGPQQFQTFPVQQNVVGQQ
GANFTVSPVPVSQAGFNNSYVRPPFYTPGVPLPPAGNMQQPMNMLSNLGQPFIPPSTVPF
NQPAPQFPPPESHFGQVDVNDLLSKLISTGIISTGGIKPAQSTDTAAAPSGTESAATQPT
PPMVEEEEEEEQEEDENVPDLTGFVIEDMKQRYDSVVTKLYTGIQCYSCGMRFTASQTDV
YADHLDWHYRLNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSLFFEKVNEEVV
QKTQEAAKEKEFQSVKAAADVVDETCEICQEQFEMYWEEEEEEWHLRDAIRVDEKTYHPS
CFEDYNNTSSFLDVTPSPIKLMENPLGAFIKRENDEVTSCCAAVKQEVEASLSETGGEAQ
NVKDEVQVKMEGETSAIS
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctcgtaataaatggttatgtttctgataagattggtttagtatttgatcga
tcagacatcgcaaagatggacgacgcggcgagggaagatgcctgccgagagtatcagtcc
tccctcgaagatttgacattcaacagtaaacctcacatcaacatgctgaccattctggca
gaggagaatctgcacttcgccaaggatatcgtcgcaataattgaagcacaaatcaccaag
gctccagctgccgagaagcttccagttttgtacttagtggattccatagtgaagaatgtt
ggaggcgaataccttgcagtgtttgctaaaaacctagtcacttcatttatatgtgttttt
gaaaaggtggatgagaacactaggaaaagtctgttcaaattacgttccacctgggatgag
atcttcccgctgaagaaactctacgctctggacgtgcgagtcaactctcacgacccggcc
tggcccatcaaagcactgccccctactgtgaacgccagcattcatgtcaaccctaagttt
ttaaaacatcctgaggaggtgacctcccctagggccctgtcccccgcacctctagtccgc
gccccagcccctgctccccagcctgcagtggtccccagcgtcagtgagaagagcatcacc
caggagcaggtgataaggcagcagctgctggccaagcagaaacagctactggagctacag
cagaagaagattgagcttgagctggagcagaccaaagcacaactgtcctgcccctctttt
acatttcaggctgctaacgtggtgctgtcaactccagcaatagtgccaaaggccaccctg
cctccctctgtcatcaaaccctgtatcccccctgtctccgaccccaaaccccccaccagg
gacccccgcctcaaccgggccggcccaggggccccccaggccaaagaatcaaccagccat
aagaaagaaggccatgttatgggaggaccagcacacacaccagagaaacagctgccagag
cgacccggcaggcccgagaggacacggccccccaagaaagaacttctagaagtgaaaacc
aagtccaagtccctctctcccatggctaaaggggtgcttgggaagagcaagcactatgag
gctgagaacgtgaagacgacagcggacgccccgggcaagaaagaccccaggctgaggaaa
catctccatgacaaggctgacccgaaagaagaggtgaaagagaagaagaaatgcactgat
aaggacaaagagatggatgaggcagtgatgaaggcatcaggcagggggaagatggccaac
ggctcagtcagcaaaccggagcgtgagaaaccggagcctgtagagaaaccggagaaccag
atcagagggaatgccaggaccaacgccaggaaacgctcccgttccccctcgctgcatctg
cactcacctaagaggaagactgagaggaggtcccccaagaggagagccaggagcatctcc
ccctctcctcctttacacaaacctgggaaaggaggaaggcagtcaggaggcaagcactcc
tctcaccacgaggacttcccccagcacgggaccaccagagaggagagggtaacccccaag
aagagctcgtctgagcccaggagaaccaagaggccggctgaggagaggccggtggaggcc
agggacacgcattcctccccccgcactacctcagagggcaaggagaccaaggagaatgcc
aagcgctggaggagtggctgggaagagaacaaacatctgaagttgtcgtcagaggaggct
catgggaagggggcaggtcctccacagagacggccgtcatactccagcagcaagagacct
accacccctaaacagcatcgccttagtgtcgatgcaaacctgcagatcccagaggtgctt
cactctgccagcaagagagacctgctcaaaaaggccagtaagcatctggagaacggagag
atcagccatgatgacttcctgaacgtggctcaccagatcaagcagctgttccagtaccag
gaagagaagcagcgaggaggtgactcctgggagggctccagtgaggatggccacggacac
gcccacccacaccacctcccaccaaccaggaagaagcccctgctggccacacccacaggg
ggagtgtcctccggggcggacttgtccgacgcagagctcacctactatgaacacaagtcc
aagctgaggaggacccaggtgatgctgtggcagcaggagcaaggaggggagggctgggac
ggagaggacagccaggaggaggtagagggggtgctggggaggcccggggagggccctggg
ggtgccaagactgaggttaacagggagactaacacccttccttcagggatgaagttcacc
aggcttcctaaggacaggctgaaggaggtagaggaggagcagcccaccccagcagccatc
atccaggagtacagccacgggaacgagttccccaggctcaagtctctgccagggctacgc
ttcaggaggatacaagaccccagggagtccactgccaccgacagactcaaagctggtgaa
agagagcggaactcccccctcagtgagcggctgcccaatcacagaccaccgtacgatgag
agggaggagcctaagagcggctacaatgcccctcccaggcggtacggaggaggtccgctg
tctgaagaccactctgtcaaacctccgtacccccgttacgacgatcctcgcaaacacgaa
cgcatcgcccccaaaccccccagcggcccggtgctccagaactcagtcagcctggcactg
gacggccccattaggaagtccccggttcctttaccggcaccagcatacgagcgggagcgc
ctgtccccgttacagcagatggatgcggcggagatgagccctgtcccacgctttgagagc
cccaacagcgagcactcgtgtgaagaagggcccctggacaccccacctctacccagaccc
caccacccaggaggacccccccgcgggcccgcactctccttagtacgcagcaaacacggt
gagtctccaggacacacccctccccacaccgcagatgggccccagagatacgacggtggt
cccaaaggaggaccaccttcgccacgctacgacggaccccacaagggcactcagtctggg
tatgatgggcctggtcacataggtcagcctggcaggcctcaccctgggggccgttacgag
ggcgtccaggggcccggtaggtacgatggaccagggtgctcctcacacggcccatcaagg
tatgatgggccctaccctcagggccccggcaggttcgatggcccccctctacataaagga
ccagagaagtttgacggaccaggaagatacgacggcccctccatgcctcacgttccaatg
agaggggacccacaaggcattgggggaaggtttgacggcggcccgccgcctccgcagcaa
ggtaggccatcggggcgatatgatagtagatttgacggacaggggcctgggccaatgcgt
ttcgacggccccatgcagtccaaccgcttcgacggtccaatgaacttcaacaactcccac
atgcagcccggccctggaaggttcgaaggactaatgaggttccagcaaggccccatgaga
ttcgatggcgctcccaaccagccaggcccgatgcgttttgatggcccagtgaacccctcc
accccaatgggccagcctggccccatgcgctatgaccccctgccctctctgcccccccag
ggcatgcccccacgctttgattgcccctccggccagcaggtgtctcccaggtaccatgcc
actcccaacctgcagcccccactgcggccactagggacacccatgtatgacccagtcaac
cccggaggccctcagcagttccagacgttcccagtgcaacagaacgtggtgggccaacag
ggggctaacttcacggtgtctcccgtccctgtgtcccaggctgggttcaacaactcctac
gtcagacctccgttctacacccctggtgtgcctctgccaccggcagggaacatgcagcag
ccgatgaacatgctttctaaccttggccagcccttcatccctcccagcacagtgcctttc
aaccagcctgctccccagttccctcctccagagagtcactttgggcaggtagatgtaaac
gacctgctgtccaagctcatttccaccggcatcatctctaccggaggcatcaaaccagct
cagagtacagacactgctgcagcacccagcggtacagagtcagccgccacccaacctacc
cctcccatggtagaagaggaggaagaggaagagcaggaggaggatgagaatgtcccagac
ctcaccggcttcgtcatcgaagacatgaaacagcggtatgacagcgtggtgactaagctg
tacacagggatccagtgttactcctgcggcatgcgtttcaccgcctctcagacagacgtc
tacgctgaccacctcgactggcactaccggctgaaccgttccgagaaagacatcagcaag
aaggtcacacaccgccgctggtactacagcctcacggactggatagagtttgaggagata
gcggacctggaggagcgggccaagagcctgttctttgagaaggtgaatgaggaggtggtg
cagaagacccaggaggccgccaaggagaaggagttccagagtgttaaagcagctgcagat
gtggtggatgagacgtgtgagatctgccaggagcagtttgagatgtactgggaggaggag
gaagaggagtggcacctgagagatgccatcagagtcgacgagaagacatatcatccttca
tgttttgaagattacaacaatacatcttcgttcctggacgtcaccccatcccccattaag
ctgatggagaacccgctgggtgcgttcataaaacgtgagaacgatgaggtcacttcctgc
tgtgctgcggtgaaacaggaagtggaggcttcgttgtctgagacgggcggtgaggctcaa
aatgtgaaggatgaagttcaggtgaaaatggagggagaaacgagtgcaatttcctag
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integrated database retrieval system
