Salmo trutta (river trout): 115156749
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Entry
115156749 CDS
T08542
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115156749
03015 mRNA surveillance pathway
115156749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115156749
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115156749
5.6.2.5 RNA 5'-3' helicase
115156749
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115156749
mRNA cycle factors
Common to processing body (P body) and stress granule
115156749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
115156749
NCBI-ProteinID:
XP_029560256
Ensembl:
ENSSTUG00000045435
LinkDB
All DBs
Position
21:14181921..14192791
Genome browser
AA seq
1105 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQVNGP
DGVLQNGEDSAVKASQLLAELNFEEEEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLTNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AVNPVFQGGRFMSTAMYDAREALIPGSVYDRSSTARTSNMYFQTHDQISMIGPGPMASLN
IPIPFNLVMPPMPPPGYLGQVNGPQAGRGGGMKGKAGGGARGGRQRSRGMASHGGGNGQH
GHMSVSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQID
VALSQDSTYQGERAYQHGVTGLSQY
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacaccgaggaa
gccgacttgcttggagcagatacccagggttcggaatatgagttcacagattttacccta
ccgagccagactcaaacaggccagacgcagagtcagttggacaaccaggtgaatgggcct
gatggagttctgcagaatggggaagactctgctgtaaaagcaagtcaactccttgcagag
ttgaactttgaagaagaggaggaggacacctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcacgatccggcatgcgttgtgtattgcaacaccagcaagaag
tggttttgcaatggacgaggcaatacgtctggcagtcacattgtgaaccacctggtcaga
gcaaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctggggttcatccccgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctctcctggctg
gtgaagatcccctcagagcaggagcagcttcgggcccgccagatcaccgcccagcagata
aataagctggaggagctctggaaggaaaaccccacggccactctggaggaccttgagaag
cccggcgtggacgaggagcctcagcacgtgctgctgcgctatgaggatgcctaccagtac
cagaacatatttggccccctggtcaaactggaggccgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacctgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgag
atatgcctgaggtacaagggagaccttgccccactctggaagggtattggacatgtcatc
aaagtcccagacaactatggtgacgagatagccatcgagttgaggagcagtgctggggct
cctgtggaagtgccacataacttccaggttgactttgtgtggaagtccacctcttttgac
aggatgcagagcgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggacgtggtcatcaagtgtcaactgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaagacc
gtgctgcagcgtcctctcagtctcatccagggcccccctggcacggggaaaacggtcacc
tctgccactgtagtctaccacctggccagacagggcaacgggccagtgctggtgtgcgct
cccagcaacatcgcggtggaccagctgactgagaagatccacatgtcgggcctgaaggtg
gtgaggctctgtgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctgcagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgctacagggccctgaagcgcacc
gccgagagggaactactcacgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacgcaggcc
actgagcccgagtgcatggtgcctgtcatactgggggccaaacagctgattctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggcagccaaagcgggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtccag
taccgtatgcacccagccctcagcgccttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcggctgaccgcatcaagaaaggctttgacttccagtggccacag
ccagacaaacccatgttcttctatgtgacccagggccaggaggaaatcgcaagctccgga
acctcctatctaaacaggactgaggcttccaacgtggagaagatcaccaccaggctgctc
aaggccggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcaatacatgcagttcagtggctccctccacaccaagctctaccaggaggtg
gagatagccagtgtcgatgccttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcatcggcttcctcaacgacccacgacgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccaccttctcaactactacaaggagcagaaggttctggttgaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaagctggtcaac
gccgtcaaccctgtttttcaggggggccgtttcatgagcacagccatgtatgatgccagg
gaagctcttattcctggatctgtgtatgaccgcagcagcactgcacgtacatccaacatg
tacttccagacccacgaccagatcagcatgattggcccaggccccatggcctctttgaac
atccccatccccttcaacctggtcatgccccccatgcccccgccaggctacctgggccag
gtcaacggcccccaagcaggccgtggcggaggtatgaagggtaaggcgggcggaggggca
cgaggcgggcgccagaggagccgtggtatggcgagccatggcgggggcaacgggcagcac
ggccacatgagtgtcagccaggccagccaggacctgggctcccagcccttctcccaggga
cctctcacccagggctacatcaccatgagccagccctcccagatgagccagcctggcctg
tcccagcctgaactctcccaggacagctaccttggcgatgagttcaagtcccagattgac
gtggccctctcccaagactccacctaccagggtgaacgagcctatcaacatggtgtgact
ggattgtcccagtactag
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integrated database retrieval system
