Salmo trutta (river trout): 115158097
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Entry
115158097 CDS
T08542
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115158097
03015 mRNA surveillance pathway
115158097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115158097
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115158097
5.6.2.5 RNA 5'-3' helicase
115158097
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115158097
mRNA cycle factors
Common to processing body (P body) and stress granule
115158097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
Helicase_RecD
DEAD
AAA_16
AAA_22
SRP54
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
115158097
NCBI-ProteinID:
XP_029562482
Ensembl:
ENSSTUG00000007242
LinkDB
All DBs
Position
22:complement(12276308..12295649)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVNG
PNEGLHNGGVDDVAKASQLLSELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEITHNYQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYQLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLTNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSSFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
RPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVVPPMPPPGYLAQANGPAAGRGGALKGKAGRGGRQRTRGMGNHSGSG
QANGHNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtacgggccgagttctcaaacgctcaccttcctggacaccgaagaa
gcggagctacttggagcagatacccagggctcggagtacgagtttaccgattttacccta
cctagccagacacaaactcaaggccacacccagagccagctggacaatcaggtgaatggt
cctaatgaagggcttcacaatggaggggttgatgatgttgccaaggcgagccaactcctc
tctgagttgaactttgaggaggatgaagaggacacctattacactaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcttgtgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatcgtaaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagacgggccgctgggcgagacggtg
ttggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatacccgccaag
gccgactctgtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacataaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtct
tggctggtgaagatcccctcggagcaggagcagctccgggcccgccagattactgcccaa
cagatcaacaagctagaggagctctggaaggacaatccaacagccactctggaggatctg
gagaagcccggtgtagacgaggagcctcagcatgtgctgctgcgctacgaggatgcctac
cagtaccagaacatcttcggcccccttgtcaaactggaggccgactacgacaaaaaactt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaggga
gatgagatttgtctgcgctacaaaggagacctggccccactttggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagctcctgtggaaataacccacaactaccaggtggatttcgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acgtccgtgtcgggctacatctaccacaagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagctgcccaaacgcttcactgcccagggcctgcccgacctcaaccactct
caggtgtatgctgtgaagactgtgctgcaaagacccctcagtcttatccaaggccccccc
ggcactgggaaaactgtcacatctgccaccatagtgtaccagctcgccaggcagggcaac
ggacccgtgctggtgtgtgctcccagtaacatcgcggtggaccagctgactgagaagatc
cacatgtcaggtctgaaggtggtccggctgtgtgctaagagcagagaggccatcgactcc
cccgtctcattcctggcgctgcacaaccagatccgcaacatggacagtatgccagagctg
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtctgctgacgagaagcgt
taccgggccctgaagcgcaccgctgagcgagagctgctcacgaatgcggatgtgatctgc
tgtacctgtgtcggggcaggagatccacgcctggccaagatgcagttccgctcgatcctg
attgatgagagcacccaggccaccgagccagagtgcatggtgcctgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtctctgtttgagcgtctggtggtgctgggcatcagg
cccattcgtctgcaggtgcagtaccgtatgcacccggccctcagctctttcccgtccaac
atcttctacgagggctccctgcagaacggagtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccgcagccagacaagcccatgttcttctatgtaactcaaggccag
gaggaaatagccagctctggaacgtcctacctgaacagaactgaggcggccaacgtggag
aagatcacaaccaggctgctgaaggctggggccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagttcagtggttccctccac
acaaaactctaccaggaggttgagatcgccagcgtggatgcattccagggcagggagaag
gactttatcatcctgtcgtgcgtacgagccaacgagcaccagggcatcggcttccttaac
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aacccaaaggccctgtccaagcagcctctgtggaaccacttactcaactactacaaggag
cagaaggttctggtggagggacctctcaacaacctgagagagagcctgatgcagttcagc
aggccccgcaagctggtcaatgccatcaaccctggagcccggttcatgagcactgcaatg
tatgatgcccgcgaggccctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtatttccaaacccacgatcagatcggcatgattggggctgggccagcc
cacatggcggccatgaacatgcctattcccttcaacttggtggtgccccccatgcctccg
ccaggctacctggcccaggccaacggccctgctgcaggtcgcggtggggcgctgaagggc
aaagcagggcgtggcgggcgccagaggacccgcggcatggggaaccacagtggcagcggg
caggccaacgggcacaacagccaggccagccaggacgtgtcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagtcagccctcccagatgagccagcctggc
ctctcccagcctgaactttcccaggacagttatttaggtgacgagttcaagtctcaaatc
gacgtggctctgtcgcaggattcgacttaccagggtgaacgtgcataccaacatggtggg
gtgactggactgtcacagtactag
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integrated database retrieval system
