Salmo trutta (river trout): 115169977
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Entry
115169977 CDS
T08542
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115169977 (upf3b)
03015 mRNA surveillance pathway
115169977 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115169977 (upf3b)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115169977 (upf3b)
mRNA cycle factors
P-body specific factors
115169977 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF1924
Motif
Other DBs
NCBI-GeneID:
115169977
NCBI-ProteinID:
XP_029582010
LinkDB
All DBs
Position
3:complement(20899875..20908796)
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AA seq
479 aa
AA seq
DB search
MKEDKENTRPIEKIMEIKCEDTEKTEKPKPEKKEAMTKIIIRRLPPSITKEELEDQLQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKIAKKRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRQRDEERRKWREEDRRKRKEAEKFKKGD
KSAEKDKDQAKEEPKIKLLRKPDRGDDVDVEKPKEKSKKPEKDKMKDDRAPGGSDMKKRQ
NHETREDRGSRKADEDGHKEGHRDGHKDFRERDVERYRDRERDRERERRQKEKERIRRQD
EDRRRRRERHDGENSYRKREDEGKKEKGDRVWEKRKGENAGDSVSHTSSHTDKPKKSEET
LREEKAKRDRLRNKDRPAIQLYQPGARNRGARGGGGAESHAGERKSESESKRSQEKGDE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggacaaggaaaacactcgtccgattgagaaaattatggagataaaatgcgaa
gatactgaaaaaacggagaagccaaagccggagaagaaagaagcaatgacgaagatcatt
atccgacgtctgcctcctagcataaccaaggaggaactggaggatcaattgcagccactt
ccagaagtggactacctcgaatttttctccaatgacagcagcatgtacccccacgtcttc
gccagagcatacatcaacttcaagaatcaggaagatattgtccttttcagagaccggttt
gatggatatgtgttcattgataatagagggcaggagtatccagctattgttgaatttgct
ccttttcaaaagattgccaaaaaaaggagtaagaaaaaggatgccaaaagtggaacaatc
gatgaagatgctgactacaagaaattcctggagatttataatggtgatgatgaaaagttt
acatccactcctgagactctactggaggaaatagaggctaaaacaaaggagctagtagct
aagaaaacgactcccctcttggacttcttgaagaacaaacagagaatccgtgaggaaaag
aaagaggagaggagaagacgagagctagaacggaagcgccagcgggacgaggaacgtcgg
aagtggagggaggaggacaggaggaagcgcaaagaagcagagaagtttaagaaaggagac
aaatctgcagagaaggataaagaccaggcaaaggaggagccaaaaatcaagctcctgaga
aaaccagaccggggagatgacgtggatgtggaaaagcctaaagagaagtcaaagaaacct
gagaaggacaagatgaaagacgacagagctcctgggggttctgatatgaagaagcgccaa
aaccatgaaaccagggaggataggggatcacggaaagctgatgaagatggtcacaaagag
ggacatagagatggacacaaagacttcagagagcgagacgtagaaagatacagggaccga
gaacgagacagggagagggaacggcggcagaaagagaaggagcgcatcagacgacaggat
gaggatcgacgaaggaggagggaacgacacgacggagagaactcgtacagaaagcgagaa
gacgaagggaaaaaggagaaaggggatcgtgtctgggaaaagagaaagggcgagaatgca
ggagactctgtaagccatacttcaagccataccgataagcctaaaaagtcagaagaaaca
ctgagggaggagaaagctaaaagagatcgtttaagaaacaaggatcggcctgccattcag
ctttaccagccaggtgctaggaaccgaggagctcgaggtggtggaggagcagaatctcat
gctggggagagaaagtcagaaagtgagagcaagagatcccaagagaagggagatgaatga
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