Streptomyces sp. 71268: OYE22_11560
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Entry
OYE22_11560 CDS
T09829
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
strz
Streptomyces sp. 71268
Pathway
strz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
strz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OYE22_11560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strz03400
]
OYE22_11560 (mfd)
Enzymes [BR:
strz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OYE22_11560 (mfd)
DNA repair and recombination proteins [BR:
strz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OYE22_11560 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WEV25770
LinkDB
All DBs
Position
complement(3094928..3098488)
Genome browser
AA seq
1186 aa
AA seq
DB search
MSLHGLLDAVVHDPALAEAVRAATDGHRTHLDLVGPPAARPLAVAALARGAGRPVLAVTA
TGREAEDLAAALRSLMPEGHEHGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLTHPSA
DDPTAGPVSVVVAPIRAVLQPQVKGLGELEPVALRGGQSADLGEVVEGLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTDDVRRRAAELAESHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPKGA
MSVVCDPERVRTRAADLVATSQEFLAASWAASAGGGEAPIDLGAASLWGIADIRDRAREL
GMMWWSISPFAAGDGLDEAGGATDGDTLTLGMRAPELYRGDIARALADTKGWLADGWRAV
YLTEGHGPASRTVEVLGGEGIAARLDPDLAELSPSLVHVSCGAVERGFIDPGLKLAVLTE
TDLTGQKAAGKDGTRMPARRRKTIDPLTLQAGDYIVHEQHGVGRYIEMVQRTVQGATREY
LLVEYAPAKRGQPGDRLFVPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEI
AADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDR
LICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVRALS
RFQTDTEAKAVLEGLRDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKK
LRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRR
ELLREGQVFYIHNRVESIDRAAAKLREIVPEARIATAHGQMGESALEQVVVDFWEKKFDV
LVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTE
TAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVA
DYRTSLEGGEEEEPPIEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAATSEEDIAAVRE
ELTDRYGPLPEPVENLLLVAGLRMLARACGVSDITLQGSQIRFGPVELRESQELRLKRLH
PRAVLKPGPRQVLVPRPTTGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgatgccgtcgtccatgaccccgcgctcgccgaggcggtg
cgcgcggccacggacggtcaccgcacgcacctcgacctcgtgggaccgccggcggcccgg
ccgctggccgtggcggcgctggcgcgcggggccggccggccggtgctcgccgtgaccgcc
accgggcgcgaggccgaggacctggccgccgcgctgcgctcgctgatgcccgaggggcac
gagcacggcgtggtggagtacccgtcgtgggagacgctgccccacgagcggctctcgccg
cgctcggacaccgtcgggcgccgcctcgccgtgctgcgccggctgacccacccgagcgcc
gacgacccgaccgcgggcccggtcagcgtggtcgtcgcgccgatccgcgccgtgctccag
ccgcaggtcaaggggcttggcgaactggagcccgtggcgctgcgcggtgggcagagcgcc
gacctgggcgaggtggtggagggcctggcggcagccgcgtacgcccgggtcgaactggtc
gagaagcgcggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgag
gagcacccgctgcgggtggagttctggggggacgaggtcgaggagatccggtacttcaag
gtcgccgaccagcgctcgctcgaagtggccgagcacgggctctgggcgccgccctgtcgc
gagctgctgctcaccgacgacgtgcggcggcgcgccgccgagctggccgagtcgcacccg
gagttgggcgaactgctcggcaagatcgccgagggcatcgccgtcgagggcatggaatcg
ctggctccggtcctggtggacgagatggagctgctactcgacgtgttgccgaagggcgcg
atgagcgtggtgtgcgacccggagcgggtgcgtacccgggcggccgacctggtggccacc
agccaggagttcctggcggcgtcctgggccgcgtcggccggtggcggcgaggcccccatc
gacctgggcgcggcctcgctgtggggcatcgccgacatccgggaccgggcccgcgagctg
ggcatgatgtggtggtcgatctcgccgttcgccgccggcgacggcctcgacgaggccggc
ggggcgaccgacggcgacaccctgaccctgggcatgcgcgcccccgagctgtaccggggc
gacatcgcccgggcgctcgccgacaccaagggctggctcgccgacggctggcgcgcggtc
tacctcaccgagggccacggccccgcctcgcgcaccgtcgaggtgctcggcggcgagggc
atcgcggcccgcctcgacccggacctcgccgaactctcgccctcgctggtgcacgtgtcc
tgcggcgccgtcgagcgcggtttcatcgacccgggcctcaagctcgcggtgctcaccgag
accgacctgaccggccagaaggcggccggcaaggacggcacccggatgccggccaggcgc
cgcaagaccatcgacccgctcaccctccaggccggcgactacatcgtgcacgagcagcac
ggcgtgggccggtacatcgagatggtgcagcgcaccgtgcagggcgcgacccgtgagtac
ctgctggtcgagtacgcgccggccaagcgcggccagcccggcgaccggctgttcgtgccg
accgaccagttggagcaggtcaccaagtacgtgggcggcgaggccccgaccctgcaccgg
ctcggcggcgccgactggacaaagaccaaggcgcgggccaagaaggcggtcaaggagatc
gccgccgacctgatcaagctctactcggcccggatggcggcccccggccacaccttcggc
ccggacaccccctggcagcgcgagctggaggacgcgttcccgtacgcggagacgcccgac
cagctcaccaccatcgccgaggtcaaggaggacatggagaagtcggtcccgatggaccgg
ctgatctgcggcgacgtcggctacggcaagacggagatcgcggtgcgggccgcgttcaag
gccgtacaggacggcaagcaggtcgccgtcctggtgcccaccacgctcttggttcagcag
cacttcggcaccttcagcgagcggtacgggcagttcccggtcaacgtgcgcgccctgtcc
aggttccagaccgacaccgaggccaaggccgtcctggaggggttgcgggacggttcggtg
gacgtcgtcatcggcacccaccggctgttctcgtccgagaccaagttcaaggacctgggc
ctggtcatcgtggacgaggagcagcggttcggcgtcgagcacaaggagcagctcaagaag
ttgcgcgccaacgtcgacgtgctgaccatgtcggcgacccccatcccgcgcaccctggag
atggccgtcaccggcatccgcgagatgtccaccatcaccaccccgccggaggagcggcac
ccggtgctgaccttcgtcggcccgtacgaggaacggcagatcggcgcggccatccggcgc
gaactgctgcgcgaggggcaggtcttctacattcacaaccgcgtcgagtccatcgaccgg
gccgccgccaagctgcgcgagatcgtgcccgaggcgcggatcgccacggcacacgggcag
atgggcgagagcgccctggagcaggtggtggtggacttctgggagaagaagttcgacgtg
ctggtctccaccacgatcgtggagtcgggcatcgacatctccaacgccaacaccctgatc
gtcgagcgcggcgacaacttcggcctctcccagctccaccagctccgcggccgggtcggc
cggggtcgcgaacgcgggtacgcgtacttcctgtacccgccggagaagccgctgaccgag
accgcccacgaacgcctggccaccatcgcccagcacaccgagatgggcgcgggcatgtac
gtggcgatgaaggacctggagatccgtggcgcgggcaacctgctcggcggcgagcagtcc
ggacacatcgcgggcgtcggcttcgacctgtacgtccgcatggtcggcgaggccgtcgcg
gactaccggacctcgctggagggcggcgaggaggaggagccgccgatcgaggtcaagatc
gagctgccggtggacgcgcacgtcccgcacgactacgcgcccggcgagcggctgcgcctc
caggcgtaccggtccatcgccgcggccaccagcgaggaggacatcgccgccgtccgcgag
gagctgaccgaccggtacgggccgctgcccgaaccggtggagaacctgctgctcgtcgcc
ggcctgcggatgctcgcccgggcctgcggcgtcagcgacatcacgctccagggctcgcag
atccgcttcggcccggtggagctgcgtgagtcgcaggagctgcggctcaagcggctgcac
ccgcgggcggtgctcaagccggggccgcggcaggtcctggtgccccggccgacgaccggc
aagatcgggggcaagccggtggtgggccgcgaactgctcgcctggaccggcgagttcctg
acgaccatcctcggctcgtag
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