Streptomyces qaidamensis: A4E84_16325
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Entry
A4E84_16325 CDS
T04777
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stsi
Streptomyces qaidamensis
Pathway
stsi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4E84_16325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stsi03400
]
A4E84_16325
Enzymes [BR:
stsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4E84_16325
DNA repair and recombination proteins [BR:
stsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4E84_16325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMW10936
UniProt:
A0A143C0C5
LinkDB
All DBs
Position
complement(3733374..3736907)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAIRAAADGNRMHVDMVGPPAARPFAVAALARETGRPVLAVTA
TGREAEDLAAALRSLLPAEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRAGQSTDLNEIVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVADHGLWAPPCRELL
LTEDVRTRARALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVDAASLWSIADVRDRARELDMM
WWSVSPFAADEELDGDTLKLGMHAPETYRGDTAKALADTKGWLADGWRAVFVTEGHGPAA
RTVEVLGSEGIAARLDGDLAEISPSVVHVACGSIDHGFVDDTLRLAVLTETDLSGQKASG
REGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALSRFQTDTEAKA
VLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELVDRYGKL
PEPVENLLLVAGLRMFARACGVGEIVLQGNNIRFAPVELRESQELRVKRLYPGVVIKPTT
HQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggacgccgccctcgcggaagcgatc
agggcggccgcagacggcaaccgcatgcacgtcgacatggtcggcccccctgcggcccgg
cccttcgcggtcgccgccctggcccgtgagacaggccgcccggtgctggcggtcacggcg
acgggccgtgaggcggaggacctggccgcggccctgcgctccctcctcccggccgagggg
gtcgtggagtacccgtcctgggagacgctcccgcacgagcggctcagcccccgcagtgac
accgtcggccgccgcctggccgtgctgcgccgcctggcccacccccgccccgacgacccc
gagaccggccccgtctcggtcgtcgtggcgcccgtcaggtccgtgctccagccgcaggtc
aagggcctcggcgacctggagccggtctcgttgagggccgggcagagcaccgacctcaac
gagatcgtcgaagccctcgcggcagcggcgtacgcgcgcgtggagctcgtcgagaagcgc
ggcgagttcgccgtacgcggcggcatcctcgatgtgttcccgcccaccgaggagcacccc
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgatcacggcctgtgggcgccgccgtgccgcgagctgctg
ctcaccgaggacgttcgcacgcgcgcgcgtgccctggccgaacagcaccccgagctcggt
gaactgctcggcaagatcgccgagggcatcgccgtggagggcatggagtccctcgcgccg
gtcctcgtcgacgacatggagctgctgctcgacgtgctgcccaagggcgccatggccgtg
gtgtgcgacccggagcgggtccgcacgcgcgcgtcggacctcgtggccacctcacaggag
ttcctgcaggcctcctgggcggccaccgccggtggcggcgaggcgcccatcgacgtcgac
gcggcctccctgtggtccatcgcggacgtccgggaccgggcccgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacgaggagcttgacggagacaccctcaagctc
ggcatgcacgccccggagacctaccggggcgacaccgccaaggccctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtgttcgtcaccgagggccacggcccggcggcc
cgcacggtcgaggtgctggggagcgagggcatcgccgcccgcctggacggggacctcgcc
gagatctccccctccgtcgtgcacgtggcatgcggctcgatcgaccacggcttcgtcgac
gacaccctcagactcgccgtcctcaccgagacggacctgtcgggccagaaggcgtccggc
cgcgagggcgcccgcatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccaccctgcaccgcctcggcggcgccgactggacgaagacgaag
gcccgcgccaagaaggccgtcaaggagatcgcggccgacctcatcaagctgtacagcgcg
cgcatggccgcccccgggcacgccttcggggcggacaccccctggcagcgcgaactggag
gacgccttcccctacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgcgccgccttcaaggccgtccaggacggcaagcaggtggccgtc
ctggtccccacgaccctgctggtgcagcagcacttcgggacgttcagcgagcggtacgcg
cagttcccggtgagcgtgaaggccctctcccgcttccagaccgacaccgaggccaaagcc
gtcctggagggactgcgcgagggctcggtcgacatcgtcatcggcacccaccggctgttc
tcgtccgagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggaacagctcaagaagctccgcgcgaacgtcgacgtgctgacgatg
tccgcgaccccgatccccaggacgctggagatggcggtcacgggcatccgcgagatgtcg
acgatcaccactccgccggaggagcgccacccggtgctcaccttcgtcggcccctacgag
gagaagcagatcggcgccgcgatccgccgtgaactgctgcgcgagggacaggtcttctac
atccacaaccgcgtcgagtcgatcgaccgcgcggcggcccggctgcgcgagatcgtcccc
gaggcgcgcatcgccaccgcccacgggcagatgtcggagtccgcgctggagcaggtcgtt
gtggacttctgggagaagaagttcgacgtgctggtgtccacgacgatcgtggagtccggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctgtcc
cagctgcaccagctgcgcggccgggtcggccggggccgcgagcgcggctacgcctacttc
ctctacccgccggagaagccgctgacggagaccgcgcacgagcggctcgcgacgatcgcc
cagcacacggagatgggcgccggcatgtacgtggccatgaaggacctggagatccgcggc
gcgggcaacctcctcggcggcgagcagtcgggccacatcgcgggcgtcggattcgacctg
tacgtgcggatggtcggcgaggcggtcgcggactaccggcgccagctggagaccggcgag
atcgaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcgcctccgtctccaggcctaccgcgccatcgcctccgcc
aactccgaggaggacatcaaggcggtccgcgaggagctcgtcgaccgctacggcaagctg
cccgagcccgtggagaacctgctgctcgtggcgggcctgcgcatgttcgcgcgcgcgtgc
ggcgtcggcgagatcgtgctgcagggcaacaacatccggttcgcgccggtggagttgcgc
gagtcgcaggagctgcgggtcaagcggttgtaccccggggtcgtcatcaagccgacgacg
catcaggtgctggtgccgcgcccgaagacggcgaaggtgggcggaaagccgctggtcggc
cgggaactgctggcgtgggtgggggagttcctgacatcggtgctggggtcctga
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