Streptomyces tubbatahanensis: MMF93_13710
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Entry
MMF93_13710 CDS
T08938
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stub
Streptomyces tubbatahanensis
Pathway
stub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MMF93_13710 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stub03400
]
MMF93_13710 (mfd)
Enzymes [BR:
stub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMF93_13710 (mfd)
DNA repair and recombination proteins [BR:
stub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MMF93_13710 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UNS97432
LinkDB
All DBs
Position
complement(3211737..3215303)
Genome browser
AA seq
1188 aa
AA seq
DB search
MSLHGLLDAVTEDPALEEAVRAAADGNRHHVDMVGPAAARPFAVAALARSAQRPVLAVTA
TGREAEDLAGALRSLLPQEGIVEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDPGDP
ATGPVSVVVAPIRSVLQPQVKGLGDLVPVALKQGQTTDLEEVVDALSAAAYARVELVEKR
GDFAVRGGILDVFPPTEEHPVRVEFWGDEVEEIRWFKVADQRSLEVAEHGLWAPPCRELL
LTPEVRRRAAELMELHPELHELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMTV
VCDPERVRTRAADLVATSQEFLQASWAAAAGGGDGAGGAAPIDVGAASLRGIAEVREHAR
ELGMMWWSVSQFTADVEAAEDGDGDTLTLGLQAPETYRGDTARALADTKGWLAQGWRCVY
VTEGHGPASRTAEVLGGEGVPARLAGSELALEPNLVHVACGSLDNGFLAPGLKLAVLTET
DLSGQKAAGKDGTRMPARRRKQIDPLTLQPGDFIVHEQHGVGRYIEMVQRTVQGATREYL
LVEYAPAKRGQPGDRLFVPTDQLEQITKYVGGEQPTLHRLGGADWTKTKARAKKAVKEIA
ADLIKLYSARMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIGEVKEDMEKSVPMDRL
ICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFSTFSERYGQFPVNVRALSR
FQTDTEARATLDGLREGTVDIVIGTHRLFSSETKFKELGLVIVDEEQRFGVEHKEQLKKL
RANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPFEEKQIGAAIRRE
LLREGQVFYIHNRVESIDRAAARLRQIVPEARIATAHGQMSEQALEQVVVDFWEKKSDVL
VATTIVENGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTET
AHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVAD
YRAALESGEAGPVEETPPEVKIELPVDAHVPHDYAPGERLRLQAYRALASATTEEDIASV
REELADRYGPLPEPVENLLLVAGLRMLARTVGVTDITLQGNNIRFSPVELRESQELRLKR
VYPGSVIKSATHQVLVPRPKPGGIGGKPLTGRDLLAWVGEFLTTVPGA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcaccgaggaccccgcgcttgaggaggcggtc
agggccgcggcggacggcaaccgccaccatgtcgacatggtgggccccgccgcggcccgc
ccgttcgccgtcgccgcgctggcacgctccgcgcagcgtccggtgctggcggtgacggcc
acgggccgcgaggcggaggatctggccggggcgctgcgctcgctgctgccccaggagggc
atcgtcgagttcccgtcgtgggagacgctgccgcacgagcggctcagcccccgctcggac
acggtgggccgcaggctcgcggtgctgcgcaggctggcgcacccggatccgggcgatccg
gccaccgggccggtctccgtcgtcgtcgcgcccatccgctcggtgctccagccgcaggtc
aaggggttgggggacctggttcccgtcgccctcaagcaggggcagaccaccgatctggaa
gaggtcgtggacgcgctgtcggctgcggcgtacgcgcgggtggagctggtggagaagcgc
ggcgacttcgccgtgcgcggcggcatcctggacgtgttcccgcccacggaggagcacccg
gtccgggtggagttctggggcgacgaggtggaggagatccgctggttcaaggtcgccgac
cagcgctcgctggaggtcgccgagcacgggctgtgggcgccgccgtgccgggagctgctg
ctgacgcccgaggtgcggcggcgcgccgcggagctgatggagctccatccggagctgcac
gagctgctcggcaagatcgccgaggggatcgcggtggagggcatggagtccctcgcgccg
gtgctggtggacgacatggagctgctgctggacgtgttgcccgcgggcagcatgacggtg
gtgtgcgatccggagcgggtgcggacgcgcgccgcggacctggtggcgacgagccaggag
ttcctgcaggcgtcgtgggcggcggcggccggcggcggcgacggcgcgggcggcgccgcc
cccatcgacgtgggggccgcttcgctgcgcggtatcgccgaggtgcgggagcacgcgcgc
gagctgggcatgatgtggtggtcggtcagccagttcaccgccgacgtcgaggcggcggag
gacggcgacggggacacgctcacgctgggcctgcaggcgccggagacgtaccggggggac
acggcgcgcgcgctggcggacaccaagggctggctggcccaggggtggcgttgcgtgtac
gtcaccgaggggcacggtccggcgtcccgtacggcggaggtgctgggcggtgagggggtg
ccggcccggctggcgggctccgagctggcgctggagccgaacctggtgcacgtggcctgc
ggctctttggacaacgggttcctcgcgccggggctgaagctggcggtgctgacggagacg
gatctgtcgggccagaaggcggcgggcaaggacggcacgcggatgccggcgcggcgccgc
aagcagatcgatccgctgacgctccagccgggcgacttcatcgtgcacgagcagcacggg
gtgggccgctacatcgagatggtgcagcgcacggtgcagggcgcgacccgcgagtatctg
ctggtggagtacgcgccggccaagcgcgggcagccgggcgaccggctgttcgtgccgacg
gaccagctggagcagatcaccaagtacgtcggcggcgagcagcccacgctgcaccggctg
ggcggcgcggactggacgaagacgaaggcgcgggcgaagaaggcggtcaaggagatcgcc
gcggacctgatcaagctctacagcgcccggatggccgcgccggggcacgcgttcggcgcg
gacaccccctggcagcgggagctggaggacgcgttcccgtacgcggagacgcccgatcag
ctcaccacgatcggcgaggtcaaggaggacatggagaagtcggtcccgatggaccggctg
atctgcggtgacgtcggctacggcaagaccgagatcgcggtgcgggccgcgttcaaggcg
gtgcaggacggcaagcaggtcgctgtcctcgtcccgacgacgctgctggtgcagcagcac
ttctccacgttctccgagcggtacggccagttccccgtcaacgtgcgggcgctgtcgcgc
ttccagacggacaccgaggcgcgggcgacgctggacgggctgcgcgagggcacggtggac
atcgtcatcggcacgcaccggctgttctcgtcggagacgaagttcaaggagctgggcctg
gtcatcgtcgacgaggagcagcgcttcggtgtcgagcacaaggagcagctgaagaagctg
cgggccaacgtggacgtgctgacgatgtcggcgacgccgatccccaggacgctggagatg
gcggtgaccggcatccgcgagatgtcgacgatcaccacgccgccggaggagcggcacccg
gtgctcaccttcgtcggtcctttcgaggagaagcagatcggcgcggcgatccgccgtgag
ctgctgcgcgaggggcaggtcttctacatccacaaccgggtggagtccatcgaccgtgcg
gcggcgcggctgcggcagatcgtgccggaggcgcggatcgccaccgcgcacgggcagatg
tcggagcaggcgctggagcaggtggtggtcgacttctgggagaagaagtcggacgtgctg
gtggccacgacgatcgtggagaacggcatcgatatctccaacgcgaacaccctcatcgtc
gagcgcggcgacaacttcggcctcagccagctccaccagttgcgcggccgggtgggccgc
ggccgggatcgcggctacgcctacttcctctacccgccggagaagccgctgacggagacg
gcgcacgagcggctggccaccatcgcccagcacacggagatgggtgccggcatgtacgtg
gcgatgaaggacctggagatccgcggcgcgggcaatctgctcggcggcgagcagtccggg
cacatcgcgggcgtcggcttcgacctgtacgtgcggatggtcggcgaggcggtggccgac
taccgggccgcgctggagtccggtgaggcggggcccgtggaggagaccccgccggaggtc
aagatcgagctgcccgtcgacgcgcacgtcccgcacgactacgcgccgggcgagcggctg
cgcctccaggcgtaccgggcgctggcctcggccaccacggaggaggacatcgcctccgtg
cgcgaggagctggccgaccggtacgggccgctgccggagccggtggagaacctgctgctg
gtcgcggggctgcggatgctggcccgcacggtcggcgtcaccgacatcaccctccagggc
aacaacatccgcttcagccccgtcgagctgcgggagtcgcaggagctgcggctcaagcgg
gtgtacccgggctcggtgatcaagtcggccacccatcaggtcctggtgccccgccccaag
ccgggcggcatcggcggcaaacccctgacgggccgcgacctgctggcctgggtgggcgag
ttcctgacgacggtgccgggagcctga
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