Schaalia turicensis: G5S47_06030
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Entry
G5S47_06030 CDS
T07393
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stuc
Schaalia turicensis
Pathway
stuc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G5S47_06030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stuc03400
]
G5S47_06030 (mfd)
Enzymes [BR:
stuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5S47_06030 (mfd)
DNA repair and recombination proteins [BR:
stuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G5S47_06030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QYB16449
LinkDB
All DBs
Position
complement(1367529..1371113)
Genome browser
AA seq
1194 aa
AA seq
DB search
MNLTGLKGIIASDSALDQACGSISSARNGCFVAPAGAHPPVLAALSEYGQAQPLIALTAT
GREAERLTAALRSWTDSVEMFPSWETLPHERLSPQVDTMARRIAVLRRLVHPVAGDPHAG
PLSVLVVPIRAFLQPIIRGVADIEVVRVKVGDRVDLTDLVDRLTELGYQCTDMVESRGQV
SVRGGILDVFPPQEAHPLRIELWGDEVDEIRAFSLQDQRTLGEAPDGLWATACRELLLNR
AVRARARELATELPGATEMLALASEGIAAPGIESLAPVLTSGMDRLLDLLPADSPIIACD
PERIAARAQDLIATTEEFLAAAWSTAAGGGQVPIKAGEASFLHYEDIWKSDDRAWWELTT
LPPPELADALGEDTSDALAEETKAVVASPTLMSMGARDVRSYRGDFVSASADLKQLASQG
WRIVITTEGPGPARRIRTIMAEAGVRATLRDDIETPVEAGSVAVTTAQAGQGFVLPGEQF
VILTESDLTGRTGSTTRDMRRMPSRRKKGVDPLSLHPGDYIVHEQHGIGRFIEMVSRTVG
RGSASVTRDYLVLEYAPSKRGQRGDQLFIPTDALGQISKYTGSDQPTLTKMGGADWAKRK
AKAKKAVNEIAKELIRLYAARQATKGHAFGPDTPWQRELEDAFPYVETPDQLVTIDEVKA
DMEKPIPMDRLLTGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHVETFTERYA
GFPVTIASLSRFSTPKETQEVKEGLASGRVDLVIGTHSLLTGTVVFKNLGLVVIDEEQRF
GVEHKETLKALRTDVDVLSMSATPIPRTLEMAVSGIREMSILQTPPEERQPVLTFVGAYT
DAQVSAAIRRELLRDGQVFFVHNRVDSISKVAAHIQELVPEARVRIAHGKLSEHQLEDVI
VDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADVFGLSQLHQLRGRVGRGRERAYAYF
FYPADKTLTETAHERLKTIAANTDLGAGLAVAQKDLEIRGAGNLLGGAQSGHVEGVGFDL
YVRMVADAVAAYRGEAPEEKSDLRMDLSVDAHIPEDYVPGERLRLEVYGKIASITSPERA
ADVREELIDRYGPLPRNVELLFDVARLRTIVRATGIEEIVTQGKYLRVGPVDLRESQVLR
LKRLHPGAVIKAAVRQVMVPLPMTSRIGGEPLTDEALLDWVETLVTKILVPFNA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccttaccggtttaaaaggcatcattgcctcagattctgcacttgatcaggcatgc
ggttcgatctcgtcggcacggaacggttgttttgttgctcccgctggcgcgcatcctccc
gttcttgctgctctaagcgaatacggacaggcacagccactgattgccctgactgcgaca
gggcgggaagctgaacgtttgactgctgccctgaggtcgtggacggacagtgttgaaatg
ttcccttcctgggaaacgctcccgcatgagcgtctttcacctcaggtcgacacgatggcc
cgtcgtattgctgtgctccgcaggctggttcatcccgttgcaggcgatccgcatgcgggt
ccactttcggttcttgttgtcccgatccgcgcgtttctccagccaattattcgaggtgtg
gctgacattgaagtcgtgcgcgtcaaagtcggggatcgtgttgacttgacggatcttgtc
gaccgactgactgaactgggataccagtgcaccgacatggtcgaatctcgcggacaagtc
agcgttcgcggtggaatccttgacgttttcccgcctcaggaagcgcatccactacgcatc
gagttgtggggggacgaagtcgatgagattcgtgccttctctcttcaagaccagcgaacc
ttaggggaagcaccggacggcctctgggcaaccgcatgccgtgagctcctgctcaatagg
gcagtgcgagctcgcgcacgcgaactggccaccgagcttccaggcgctaccgaaatgctg
gcactcgcttccgagggaatcgcggcgcccggcatcgaatccttggcaccggttctgacc
tccggcatggatcgtctgcttgatcttctgcccgcagatagcccgattatcgcctgcgat
ccggagaggattgctgcccgcgcccaagacctgatcgcaacgaccgaagaattcttagcg
gccgcctggtccaccgccgccggtgggggacaagtgcccattaaagcaggcgaggcctcg
ttccttcactacgaggacatctggaagtcggacgatcgtgcctggtgggaattgaccacg
ctccccccacccgaacttgccgacgcgcttggcgaggacacttccgacgcgctcgcggaa
gagacgaaggcagtggttgcgtccccaactctgatgagcatgggagcgcgtgacgtacgc
tcgtacaggggcgattttgtgtcggcgagcgcagatttgaagcagcttgcgtcgcagggc
tggcggattgtcatcacaactgaaggccccggtcctgcacgccgaatccgcacaattatg
gctgaagcaggggttcgggcaactctgcgtgatgatattgagactcctgtcgaagccggt
tcggttgccgttacgaccgcgcaagctggacagggttttgtcctgccgggtgagcagttc
gttatcctcacggagtcggatctgacgggtcgtacgggttctacaacccgggacatgcga
cggatgccctcgcgtcgcaagaagggtgtcgacccgctgtcactgcacccgggtgactac
atcgtccacgagcaacatggtatcggccgattcattgagatggtctcgcgcaccgtggga
cgtggctccgcatctgtcacccgtgactatctggttttggagtacgcgccttcaaagaga
ggccagcgtggggatcagctgtttattccgaccgatgcccttggacagatttccaagtac
acgggttcggatcagccgacgctgacgaagatgggtggagctgactgggcgaagcggaaa
gcgaaggcgaagaaagcggtcaacgagattgccaaggaacttattcgcctctacgctgct
cgccaagcaaccaaaggacacgcgttcggccccgatactccgtggcaacgcgaacttgag
gatgcattcccatatgtggaaacccccgatcagctggtgacgattgatgaagtgaaagct
gatatggagaagccgatccccatggatcgcctgctgacgggcgatgtcggatacggaaag
accgaaatcgctgttcgcgctgcgtttaaagcaattcaagatggcaagcaggttgctgtg
cttgttccgacgaccctgcttgtacaacagcatgtcgaaactttcaccgaacgctacgcg
ggcttccccgtgaccattgcgtccctctcgcgtttttcaacgccgaaggaaacgcaagag
gtgaaagaggggcttgcctcggggcgcgttgaccttgtgattggcactcattccttgctg
acgggaacggtggtgttcaagaacctcggccttgtcgtgattgacgaggaacagcgtttc
ggcgttgagcataaagagacgctgaaggcgctgcgcaccgacgtggatgtgctgtcgatg
tcggccacgccgatcccaagaacgctggaaatggcagtgtcaggtattcgcgagatgtcg
attctgcagactccaccagaagaacgccagccggttttgacttttgttggagcgtacacg
gatgcgcaggtcagtgcggcaattcgccgtgagttgctgcgtgacggacaggtgtttttt
gtccacaatcgcgtggattcaatttcgaaggtcgcagcccacattcaggaactcgttccc
gaggcgcgcgtgaggatcgctcacggaaaactgagcgaacaccagctagaggacgtgatc
gtcgacttctggaaccacgagttcgacgttctggtgtgtaccaccattgtggaaaccggc
ttggatatttccaatgcgaatacgctgatcgtggatcgcgccgatgtgttcggtttgtcc
caattgcaccagttgcgtggtcgagtgggacgaggccgcgagcgtgcgtatgcgtatttc
ttctatccggcggacaagactctgacggaaaccgcgcatgagcgcctgaagactatcgct
gcgaataccgacctgggtgcagggcttgctgtcgcacaaaaggatctagagatccgaggt
gccggcaacctgctgggcggggctcaatccggtcatgttgaaggggttggcttcgacctg
tatgtgaggatggtcgccgatgcggtcgcagcctatcgtggcgaggctcctgaagagaag
agcgacctgcggatggatctgagcgttgatgcccacattcctgaggactatgtgcccggt
gagcgtctgcgcttggaggtatacggcaagattgcgtcgatcacgtcgcccgagcgagca
gccgatgtgcgcgaggaactgattgaccgatacgggccgttgccccgcaatgtggaattg
ctgttcgatgttgctcgccttcgcactatcgtgcgcgcaaccggtattgaagagatcgtg
acccagggcaagtatctgcgtgttggtccggtagacctgcgcgagtctcaggttcttcgc
ttgaagcgtttacacccgggtgcggtcattaaagctgctgttcgacaggtcatggttccc
cttcccatgactagtcgaatcggcggagaaccgctcacggatgaagcgttgctggattgg
gttgaaactttggtaacgaagattcttgtcccttttaacgcctga
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