Streptomyces tubercidicus: STRTU_004280
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Entry
STRTU_004280 CDS
T09099
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stud
Streptomyces tubercidicus
Pathway
stud03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STRTU_004280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stud03400
]
STRTU_004280 (mfd)
Enzymes [BR:
stud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STRTU_004280 (mfd)
DNA repair and recombination proteins [BR:
stud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
STRTU_004280 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WAU13747
LinkDB
All DBs
Position
4897319..4900882
Genome browser
AA seq
1187 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVQAATDGHRPQVDLVGPPAARPFAIAALARQAGRPVLAVTA
TGREAEDLAAALRSLMPAGEDNSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRQ
DDPTAGPVSVVVAPIRSVLQPQVKGLGDLEPVSLRTGETADLEEIVDGLAAAAYSRVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTDQVRQRAAVLAEHHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGS
MAVVCDPERVRTRAADLVATSQEFLQASWAAAAMSDGRAADGVAPIDVGAASLWGIADVR
DRARELGMMWWSVSPFAADEDLDNDGDTLKLGMHAPDTYRGDTQRALADTKQWLADGWRT
VFLTEAHGPAARTVEVLSGEGIAARLDADLAEISPSLVHVSCGSLDNGFLDPALRLAVLT
ETDLSGQKAAGKDGARMPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATRE
YLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKE
IAADLIKLYSARMAAPGHTFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMQKSVPMD
RLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYGQFPVNVRAL
SRFQTDTEAKAVLEGLRDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLK
KLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIR
RELLREGQVFYIHNRVESIDRAAARLREIVPEARIQTAHGQMGESQLEQVVVDFWEKKFD
VLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLT
ETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAV
ADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASASSEDDIAAVR
EELTDRYGKLPEPVENLLLVAGLRMLARACGVSDITLQGANVRFGPVELRESQELRLKRL
YPRTVLKPAAQQVLVPRPTTARVGGKPVVGRELLAWTGEFLTSVLGS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtg
caggccgcgaccgacgggcaccgcccccaggtggatctggtggggccgccggccgcccgc
cccttcgcgatcgccgcgctggcccggcaggccggccgcccggtgctcgcggtgaccgcc
accggccgggaggccgaggacctcgccgccgcgctgcgcagcctgatgccggccggcgag
gacaactccgtcgtggagttcccgtcctgggagacgctgccgcacgagcggctctccccg
cgctcggacaccgtcggccgccgcctcgcggtgctgcgccggctcgcccacccgcgccag
gacgaccccaccgccggcccggtctcggtcgtcgtcgccccgatccgctcggtgctccag
ccgcaggtcaagggcctgggcgacctggaacctgtcagtctgcgcacgggggagaccgcc
gacctcgaagagatcgtcgacgggctggcggcggccgcctactcccgcgtcgagctggtc
gagaagcgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgccgaccgag
gagcacccgctccgggtcgagttctggggcgacgacgtcgaggagatccgctacttcaag
gtcgccgaccagcggtccctggaggtcgccgagcacgggctgtgggcgccgccgtgccgc
gagctgctgctgaccgaccaggtgcggcagcgggccgcggtgctcgccgagcaccatccc
gaactgggcgaactcctcggcaagatcgccgaggggatcgccgtcgagggcatggagtca
ctggctccggtcctggtggacgacatggagctgctgctggacgtgctgccgaagggctcc
atggccgtggtgtgcgacccggagcgggtacggacccgggccgccgacctggtggcgacg
agccaggagttcctccaggcgtcctgggcggccgccgcgatgtccgacgggcgggcggcg
gacggcgtggccccgatcgatgtgggcgcggcctccctgtggggcatcgccgacgtccgg
gaccgggcgcgcgagctggggatgatgtggtggtcggtcagcccgttcgcggccgacgag
gacctggacaacgacggcgacaccctcaagctggggatgcacgcccccgacacctaccgc
ggtgacacccagcgggcgctggccgacaccaagcagtggctcgcggacggctggcgcacg
gtgttcctcaccgaggcgcacggccccgcggcccgcaccgtcgaggtcctcagcggcgag
ggcatcgccgcccgcctggacgccgatctcgccgagatctccccgtccctcgtccatgtc
tcctgcggctccctcgacaacggcttcctcgacccggcgctccggctcgccgtcctcacc
gaaaccgacctctccggccagaaggcggccggcaaggacggggcccggatgccggcccgc
cgccgcaagaccatcgacccgctcaccctcgaagccggcgacttcatcgtccacgagcag
cacggagtgggccgctacatcgagatggtgcagcgcacggtccagggcgccacccgcgaa
tacctcctcgtcgagtacgcccccgccaagcgcggccagcccggcgaccgcctctacatc
cccaccgaccagctggaacaggtcaccaagtacgtcggcggggaggcccccaccctgcac
cgcctgggcggcgccgactggaccaagaccaaggcgcgcgccaagaaggccgtcaaggag
atcgccgccgacctcatcaagctctactcggcgcggatggcggcccccggccacaccttc
ggcgcggacaccccctggcagcgcgaactggaggacgccttcccgtacgcggagacgccc
gaccagctcaccaccatcgccgaggtcaaggaggacatgcagaagtcggtcccgatggac
cggctgatctgcggcgatgtcggctacggcaagaccgagatcgcggtccgcgccgccttc
aaggccgtccaggacggcaagcaggtcgccgtcctcgtcccgacgaccctcctcgtccag
cagcacttcggcaccttcaccgagcgctacggccagttcccggtcaacgtccgggcgctg
tcccgcttccagaccgacaccgaggccaaagcggtcctcgaagggctgcgggacggctcc
gtcgacctcgtcatcggcacccaccgcctgttctcctccgagaccaagttcaaggacctg
ggcctggtcatcgtcgatgaggagcagcggttcggcgtcgagcacaaggaacagctgaag
aagctccgcgccaacgtcgacgtcctcaccatgtccgccacccccattccccgcaccctg
gagatggcggtgacgggcatccgcgagatgtcgacgatcaccaccccgcccgaggagcgc
cacccggtcctcaccttcgtcggcccctacgagcagaagcagatcggcgccgccatccgc
cgtgaactcctgcgcgagggccaggtcttctacatccacaaccgcgtcgagtcgatcgac
cgcgccgccgcccggctccgcgagatcgtccccgaggcccgcatccagaccgcccacggc
cagatgggcgagtcccaactggagcaggtcgtcgtcgacttctgggagaagaagttcgac
gtcctggtctccacgacgatcgtcgaatcgggcatcgacatctccaacgccaacaccctg
atcgtcgaacgcggcgacaacttcggcctctcccaactccaccagctgcgcggccgggtg
ggccgcggccgcgaacgcggttacgcctacttcctctacccgccggagaagccgctcacc
gagaccgcccacgagcggctggcgaccatcgcccagcacaccgagatgggcgccggcatg
tacgtcgccatgaaggacctggagatccgcggcgcgggcaacctcctcggcggcgaacag
tccggccatatcgccggcgtcggcttcgacctctacgtccggatggtgggcgaggcggtc
gccgactaccgcgcctccctcgaaggcggcgtggaggaggagcccccgctcgaagtcaag
atcgaactcccggtggacgcgcatgtcccccacgactacgcccccggcgagcggctgcgc
ctccaggcgtaccgcgccatcgcctccgcctcctcggaggacgacatcgccgccgtccgc
gaggaactcaccgaccgctacggcaagctgcccgagcccgtggagaacctcctgctggtc
gcgggcctgcggatgcttgcccgcgcgtgcggggtctccgacatcaccctccagggcgcc
aacgtccgtttcggccccgtggagttgcgcgagtcccaggagctgcggctgaagcggctg
tatccccgtacggtgctcaagcccgcggcgcagcaggtgctggtgccgaggccgaccacc
gcgcgggtcggcggcaagccggtggtcggtcgcgagctgctcgcgtggacaggtgagttc
ctcacgagcgttttgggctcgtag
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integrated database retrieval system
