Streptococcus sp. VT 162: V470_05490
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Entry
V470_05490 CDS
T03287
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stv
Streptococcus sp. VT 162
Pathway
stv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V470_05490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stv03019
]
V470_05490
03016 Transfer RNA biogenesis [BR:
stv03016
]
V470_05490
Enzymes [BR:
stv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V470_05490
Messenger RNA biogenesis [BR:
stv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V470_05490
Transfer RNA biogenesis [BR:
stv03016
]
Prokaryotic type
tRNA degradation factors
V470_05490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
CSD
HTH_24
FeoC
Motif
Other DBs
NCBI-ProteinID:
AHZ47877
LinkDB
All DBs
Position
complement(1116978..1119332)
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AA seq
784 aa
AA seq
DB search
MKDKIKEYLQEKGRVTVNDLAQALGKDGSKDFRELIKTLSLMERKHQIRFEDDGSLCLDQ
KKKHEITLKGIFHAHKNGFGFVTLEGEEDDLFVGKNDVNYAIDGDTVEVVIKKVADRNKG
TAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAIKLEGTEV
LKVFIDKYPSKKHDFFVASVLDVVGHSTDAGIDVLEVLESMDIVSEFPEAVLKEAESVPE
APSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGS
ALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDKHGRVVNYTI
TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHETLESMREKRGALNFD
TSEAKILVDKKGKPVDIVLRQRGVAERMIESFMLIANETVAEHFSKLDLPFIYRIHEEPK
AEKVQKFIDYASSFGLRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYS
EHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYSRSKEIAEHFEQVIPEIATQSSNR
ERRAIEAEREVEAMKKAEYMEKYVGEEYDAVVSSMVKFGLFVELPNTVEGLIHITNLPEF
YHFNERDLTLRGEKSGTTFRVGQQIRIRVERADKMTGEIDFSYIPSEFDVIEKGLKQAGR
KDRGRGSSRRSDKKEDKRKSGCSSDKHKHSQKDKKKKGKKPFYKEVAKKGAKHGKGRGKG
RRTK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataaaattaaagaatatttgcaagagaaggggcgagtgacggtaaatgaccta
gctcaggctctcggaaaggatgggtccaaggatttccgtgagttgattaaaaccctgtcc
ctgatggaaagaaagcaccagattcgttttgaagatgatggtagcttatgtctggaccaa
aagaagaaacatgaaattaccctcaaagggatttttcatgcccataaaaacggctttggc
tttgttactctggaaggcgaagaggacgacctttttgtaggaaaaaacgatgtcaactat
gctattgatggcgataccgttgaggtcgtgattaagaaagtcgctgaccgcaacaaggga
acagctgcagaagccaaaattatcgatatcctagagcatagcctgacgacagttgtcggg
caaatcgttctggatcaggaaaagcccaagtatgcgggctacattcgttcaaagaatcag
aaaatcagccaaccgatttatgtgaagaaaccggctatcaagttggaaggtactgaagtt
ctcaaggtctttatcgacaaatacccaagtaagaaacatgatttctttgtcgctagtgtg
ctagacgtggtggggcactcgactgatgctgggattgacgttcttgaagtcttggaatcc
atggatattgtttcagaatttccagaagctgttctcaaggaggcagaaagtgtaccagaa
gctccgtctcaaaaggatatggaaggtcgtctggacctgagagatgaaatcacctttacc
attgacggcgcggatgccaaggacttggacgacgcagttcacattaagcctttgaaaaat
ggaaatctagaactcggagttcacatcgcagatgtttcctactatgtgaccgagggttct
gcccttgacaaggaagcccttaaccgcgcgacttctgtctacgtgacagaccgagtggtg
ccaatgcttccagagcgtttgtcaaacggcatctgctctctcaatcctcaagtagatcgc
ttgacccagtctgctattatggaaattgataaacacggtcgtgtggttaattacaccatt
acccaaacagttatcaagactagctttcgtatgacctatagcgatgtcaatgatatccta
gcaggtgacgaggaaaagagacaagagtataagaaaattgttcctagtatcgaactcatg
gccaagcttcatgaaactctagaaagcatgcgtgagaagcgtggcgcccttaactttgat
accagcgaagcaaagattctagtggataaaaaaggtaagcctgtggatatcgttcttcgt
cagcgtggtgttgctgagcggatgattgagtccttcatgttgattgctaatgaaacggtt
gccgagcactttagtaaactggacctacctttcatttatcggattcacgaggagcccaag
gctgaaaaagttcagaagtttattgattatgcttcgagctttggtttgcggatttatggg
actgccagtgagatgagtcaggaggcgcttcaagacatcatgcgtgctgttgagggagaa
ccctatgcggatgtattgtccatgatgcttcttcgttccatgcagcaggctcgctattct
gagcacaatcacggtcactatggtcttgctgccgactattacactcattttaccagtccg
attcgccgttatccagacctccttgttcatcgaatgattcgggattacagccgttctaag
gaaatagcagagcattttgaacaagtgattccagagattgcaacccagtcttccaaccgt
gagcgtcgtgccatcgaggcggagcgtgaagtcgaagccatgaaaaaggctgagtacatg
gaaaaatacgtgggtgaagagtacgatgcagttgtatccagcatggtcaaatttggtctc
tttgttgaattgccaaatacagtcgaaggcttgattcacatcaccaatttacctgaattt
tatcatttcaacgagcgtgatttgactctccgtggggagaaatcaggaacaaccttccgt
gttggacagcagattcgcattcgggttgaaagagcggataagatgacaggtgagattgat
ttctcctatatcccaagtgagtttgatgtcatcgaaaaaggtttgaaacaagctgggcgc
aaagacagaggtcgtggttcaagtcgtcgttcagacaagaaggaagacaagagaaaatca
gggtgttcaagtgataagcacaagcattcacaaaaagataaaaagaaaaaaggcaagaaa
cctttttacaaagaagtagctaagaaaggagccaagcatggcaaagggcgagggaaaggt
cgtcgcacaaaataa
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