Subtercola endophyticus: LQ955_03960
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Entry
LQ955_03960 CDS
T08409
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
suba
Subtercola endophyticus
Pathway
suba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LQ955_03960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suba03400
]
LQ955_03960
Enzymes [BR:
suba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LQ955_03960
DNA repair and recombination proteins [BR:
suba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LQ955_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UFS59949
LinkDB
All DBs
Position
805934..808513
Genome browser
AA seq
859 aa
AA seq
DB search
MTPARTSGSKGDVLVDVDGHRLKLTHLDKVIYPETGTTKADVLQYYSEIADVMLPYVRDR
AATRKRWVNGAGTAEHPGEMFFQKNLGDGTPTWVKRRAIEHSTHDNEYPLVNNRATLTWL
AQIAALEIHVPQWRFGRNGARKNPDRLVLDLDPGDGVGLPECAEVARLARTILQGMGLDP
MPVTSGSKGIHLYAALDGSQTSDQVSAVAHELARILEADHPDLIVSDMKKSLRGGKVLVD
WSQNNGSKTTVAPYSLRGRAHPMVAAPRTWRELASKSLAQLDYTEVLARVKRRGDPLSVI
LEADGGEVWLPDEPGGGVDGGVVDGDGATGAAGVAETDAPDRLHRYRSKRDGRKTPEPVP
DARPAPGEGNSFVIQKHDATRLHYDFRLEHNGVLVSWALPKGTPTETKVNHLAVQTEDHP
LEYGSFAGTIPKGEYGGGTVEIWDEGVYDLEKWREGKEIIATLHGTKKGGLGGARKFALI
HTGSGGGSKADQNWLIHLMEPHYSAASEKRHESLPPQPDDEAPAINAAVSRTTPAAPSTP
IAPMLATLGSERDLLRADEWAYEMKWDGIRAVAYIDGSGVRLLTRNGNDVSAQYPDLAEP
LTRASAGHELVLDGEIVALDSKGRPSFSRLQQRMNLQGEADVKRALAAVGVHYLVFDVLN
LDGRSLLRQTYDDRRMALEETVKPDARSLVQVPAAFAGDFAAAFAASKSLGLEGVMAKKH
ESTYTAGRRSKSWIKVKHHLTQEVVIGGWRPGNGRRAEGVGSLLLGIPDDGGLRYVGRVG
TGFSDADLDRLKQRVATLARTTSPFSDVPRDVAADANWLSPELVGEVEFAEWTGSDHLRQ
PSWRGWRTDKSPSDVKRES
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgactccggcacgcacgagcggctcgaaaggcgatgtgctcgtcgacgtcgacggtcac
cgcctcaaactgacgcacctcgacaaggtgatctaccccgagacgggcaccacgaaggcg
gatgttctgcagtactactccgagatcgccgacgtgatgctgccgtacgttcgcgaccgc
gccgccacgcgcaagcgctgggtgaacggtgcgggcaccgccgagcatccgggcgagatg
ttctttcagaagaacctcggcgacggcacccccacctgggtcaagcggcgggcgatcgaa
cactcgacgcacgacaacgaatacccgctcgtcaacaatcgcgccacgctcacctggctg
gcccagatcgccgcgctcgagatccacgtgccgcagtggcggttcgggcgcaacggggcg
cgcaagaacccggatcgtctggtgctcgacctcgatcccggagacggcgtcggcctgccg
gaatgcgccgaggtggcccggctggcgcgcacgattctgcagggcatggggctcgacccg
atgccggtcacgagcggaagcaagggcatccacctctatgccgcgctcgatggctcgcag
acgagcgaccaggtgtcggcggtcgcccacgaactggcgcgcattctcgaggcagaccac
cccgatctcatcgtgagcgacatgaagaagtcgctgcgcggcggcaaagtactcgtcgac
tggagccagaacaacggctcgaagaccacggtggcgccgtattcgctacgcgggcgcgcc
cacccgatggtggcggctccgcgcacctggcgcgagctggcgtcgaagtcgctcgcccag
ctcgactacacagaggtacttgcgcgggtgaagcggcggggtgatccgctctcggtgatt
ctcgaggccgacggcggcgaggtgtggctgccggacgaacccgggggtggcgtcgatggc
ggcgtcgtcgatggcgacggcgcgacgggcgcggctggcgtggccgagacggatgcgccc
gaccgcctgcaccgctaccgctcgaaacgcgacggccgtaagacgcccgagccggttccg
gatgcccggccggcgcccggcgaaggaaactcgttcgtcattcagaaacacgacgcaacg
cgcctgcactacgactttcggctcgaacacaacggggtgctcgtgtcgtgggcgctgccg
aagggtacgccgaccgaaaccaaggtcaatcatctcgccgtgcagaccgaagaccatccg
ctcgagtacggctcgttcgccggcactattccgaagggcgagtacggcggcggcacggtc
gagatctgggacgagggtgtctacgacctcgagaaatggcgcgagggcaaagagatcatc
gccaccttgcacggcacgaaaaagggcggcctcggcggtgcacgtaagttcgcgctcatc
cacaccggctccggcggcggctcgaaagccgaccagaattggctcatccacctgatggag
ccgcactacagcgccgccagcgagaagcggcacgagtccctgcccccgcagcccgacgac
gaggcgccggcgatcaacgcggcggtttctcgaacgaccccggccgcccccagcacaccg
atcgcgccgatgctcgccaccctcggctccgaacgtgaccttctgcgcgccgacgagtgg
gcctacgagatgaagtgggacggtattcgtgcggtggcctacatcgacgggtcgggcgtg
cgcttgctcacgcgcaacggaaacgacgtgagcgcccagtaccccgacctcgccgagccg
ctgacccgggcatccgctggccacgaactcgtgctcgacggagagattgtggcgctcgac
tcgaagggccggccgagcttcagccggctgcagcagcgtatgaacctgcagggcgaagcc
gacgtcaaacgcgcgctcgcggccgtgggggtgcactacctcgtcttcgacgtgctgaac
ctcgacgggcgctcgctgttgcggcagacgtacgacgaccgccgtatggcgctcgaagag
acggtcaaaccggatgcccgttccctggttcaggtgcccgccgccttcgccggcgacttc
gcggcagccttcgccgcgagcaagagtctcggcctcgagggcgtcatggcgaagaagcac
gagagcacctacacggcggggcgccgctcgaagtcatggatcaaggtgaagcaccacctc
acgcaggaagtggtgatcggcgggtggcggccgggaaacggccggcgcgccgagggagtc
gggtcgcttctactgggcattcccgacgatgggggccttcgttacgtcggtcgggtcgga
accggcttcagtgatgccgatctcgaccgcctgaagcagcgcgtcgcgacgctcgcacgc
acgacttcgccgttcagcgacgttccgcgagacgtcgctgcagacgcgaactggctgagc
cccgaactggtgggcgaggtcgaattcgccgagtggacgggctctgaccatctgcggcaa
ccgagctggcgcggctggcgaactgacaagtccccgagcgatgtcaagcgtgagtcgtag
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