Subtercola sp. PAMC28395: KPL76_13340 Help Entry KPL76_13340       CDS       T07261                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism subt  Subtercola sp. PAMC28395 Pathway subt03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:subt00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     KPL76_13340  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:subt03400]     KPL76_13340 Enzymes [BR:subt01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      KPL76_13340 DNA repair and recombination proteins [BR:subt03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      KPL76_13340 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S Ribosomal_S9 Motif Other DBs NCBI-ProteinID:  QWT23666 UniProt:  A0A975XRQ1 LinkDB All DBs Position complement(2904451..2907276) Genome browser AA seq 941 aa AA seqDB search MSEKAATNIREKASEPVTVSVGGHRLRLTNLDKVLYPETGTTKADVLQYYSDISEVMLPY IRDRPATRKRWVHGVGTAGHPEPMFFQKNLDDSTPSWVRRRTIAHSDHDNEYPLVNDLAT LTWLAQIAALEIHVPQWRFGSTAGGLSAGGVAAGGSAAGASTAGASTAGRSTGSAGAAGN PDRLVLDLDPGDGVGLLECAEVARFARELLQGMGLDPMPVTSGSKGIHLYAALDGSQTSE QASAVAHELARALEADHPHLVVSDMKKSLRAGKVLVDWSQNSRAKTTVAPYSLRGREHPT VAAPRTWRELASPKLAQLEYSEVLTRVKRRGDPLAVILDADHVGDADHVGDADHVGDADH VGDADHVGDADHVGDAGAASAPERDALHIYRSKRDRTKTPEPVPDTPPEPGDGNTFVIQK HAARRLHFDFRLERDGVLVSWAIPKGPPTDGHQNHLAVQTEDHPLEYGSFEGSIPRGEYG AGTVEIWDEGTYDLEKWRPGKEIIATLHGTREGGLGGDRKFALIHTGRGDNADNWLIHLM SEKYSAQSEARHASLPAQEDDEAPAINSALRAARELHDGGKNGAGQNGTGQKSVFPMLAT AGSAADVSSGHWAYEMKWDGIRAMASIDVPVSRNSGADGSPAGSSVVRLSSRSGSDLTQK YPDLLDALTDSANGRRLVLDGEIVAFDGSGRPSFGRLQQRMNLQGEADISRAVKAVAVHY IVFDVVEVDGASQLKTPYSERRMLLETLLEAPAGSRVQVPPVFDGDYDAAFQSSVDLGLE GIVAKRVNGTYSAGRRSRAWIKIKHHRAQEVVVGGWRMGAGRRANGVGSLLLGIPATGLP GRGLPAGNFAANGTLQYIGRVGTGFSDAELDLLIEKFAGMESDECPFGDLPREARMGARW LRPEFVGEVEFVEWTAAGILRQPTWRGWRPDKAPRTVVRES NT seq 2826 nt NT seq  +upstreamnt  +downstreamnt atgagcgagaaagccgctaccaacattcgcgagaaggcttccgaaccagtgaccgtctcg gtcggtggccaccggctgcggctcaccaacctcgacaaggtgctctaccccgagacggga accacgaaggctgatgtgctgcagtactactccgacatcagcgaggtcatgctgccgtac atccgcgaccgcccggccacgcgcaaacgctgggtgcacggagtgggcactgccgggcat cccgagccgatgttcttccagaagaacctcgatgactcgacaccctcgtgggtgaggcgg cgcacgatcgcccactccgatcacgacaacgagtacccgctggtgaacgacctcgcgacg ctcacctggctcgcgcagatcgccgcccttgagatccacgtgccgcagtggcggttcggc agtactgctgggggtctgtctgctgggggagtggctgctgggggaagcgctgccggggca agtactgccggggcaagtactgccgggagaagcactggaagcgctggagctgccggcaac cccgacaggctcgtgctcgatctcgacccgggtgacggagtcgggctgctcgagtgcgcg gaggttgcccggtttgcccgcgagctcctgcagggcatggggcttgacccgatgccggtg acgagtgggagcaaaggcatccacctctacgcggcgctcgacgggtcgcagacctcggag caggcgtcggcggtggcacacgagcttgcgcgcgcgctcgaggccgatcatccacatctc gtcgtgagcgacatgaagaagtcactgagggcaggcaaggtgctggtcgactggagccag aacagcagagccaagacgacggtcgcgccctattcgctgagggggcgggaacaccccacc gtcgccgcaccgcgtacctggcgcgagctggcttcgccaaaactcgcccagctcgagtac agcgaggtgctcacacgggtgaagcggcgcggcgacccgctcgcggtcatcctcgacgct gaccatgtgggtgacgctgaccatgtgggtgacgctgaccatgtgggtgacgctgaccat gtgggtgacgctgaccatgtgggtgacgctgaccatgtgggtgacgctggggcagcttcc gcgccagagcgcgatgcgcttcacatctaccggtcaaaacgcgatcgaacgaagactcca gagccggttccggatactccccccgagccgggcgacggcaacaccttcgtgatccagaag cacgctgcgcggcgtctgcacttcgacttccggctcgagcgcgatggcgtgctcgtgtcg tgggccattccgaaggggccgcccacagacgggcatcagaatcacctcgccgtgcagaca gaagaccatcccctcgaatacggctcgttcgaggggagtattccgcgcggggaatatggc gcaggcaccgtcgagatctgggacgagggcacctacgacctcgagaagtggagaccagga aaagagatcatcgccacgctccatggcaccagggagggaggtctgggtggcgatcgaaaa ttcgcgctgatccacacaggcagaggtgacaacgccgacaattggctgatccatctgatg agcgagaagtacagcgcccagagcgaagcacggcacgcttcgctgcctgcgcaggaggac gacgaggctccagccatcaattcggccctgcgagcggcacgggagttgcacgacggcggg aagaatggtgccgggcagaacggtactggccagaagagtgtctttcctatgctcgccaca gcgggatcggcagcagacgtgagttcgggtcactgggcctacgagatgaagtgggacggc atcagggcgatggcgtcgatcgacgttcccgtgtcgcgcaacagtggggccgacggctca cctgcaggcagctcggtggttcgactctcgagtcgcagcggcagtgacctgacccagaag taccctgacctgctcgatgcactcacggattcggcgaacggccgccggctcgtgcttgac ggcgagattgtcgcattcgatggctccggtcgcccgagcttcggtcgtctccagcagcgc atgaacctgcagggcgaggccgacatctcccgggcggtgaaggccgtggctgtgcactac atcgtcttcgacgtcgtcgaggtcgacggtgcatcgcagctgaagacgccatactcagag cgccggatgctgctggagactcttctggaagcgccagctggctcgagggtgcaggtgccg cccgtcttcgacggggactacgacgcggccttccagagcagtgtcgatctgggactcgag gggatcgtcgccaagcgggtgaacggcacctacagcgcgggcaggcgctcgcgggcatgg atcaagatcaagcatcaccgggcacaggaggtcgtggtcggcggctggcggatgggagcc ggtcgacgggcgaacggagtgggttcactcctgctcggcattcctgcgaccggccttccc gggagaggacttcctgcggggaactttgccgcgaacggcactctgcagtacatcggccgc gtcggcacggggttctccgacgcagaactcgatctactcatcgagaagtttgcaggcatg gagagtgacgagtgccccttcggtgacctgccgcgcgaagctcggatgggcgctcgctgg ttgagacccgaatttgtgggagaggtcgagttcgtcgaatggacggccgccggaattctg cgccagcccacctggcgcggctggcgcccggacaaagcaccccgcactgtcgtacgtgaa tcatga

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