Sphingobium fuliginis ATCC 27551: FIL70_00475
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Entry
FIL70_00475 CDS
T06343
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sufl
Sphingobium fuliginis ATCC 27551
Pathway
sufl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sufl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIL70_00475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sufl03019
]
FIL70_00475
03009 Ribosome biogenesis [BR:
sufl03009
]
FIL70_00475
Enzymes [BR:
sufl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIL70_00475
Messenger RNA biogenesis [BR:
sufl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIL70_00475
Ribosome biogenesis [BR:
sufl03009
]
Prokaryotic type
rRNA helicases
FIL70_00475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QDC35939
UniProt:
A0A5B8CA02
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All DBs
Position
cSF1:complement(107545..109293)
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AA seq
582 aa
AA seq
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MSFEHLPTLLSDALTRKGYESLTPVQAEVTQAQAKGRDLIVSAQTGSGKTVAFGLAMAAE
LLGEQNRLPVAAQPLALAIAPTRELALQVARELEWLYGEARARITTCVGGMDAAKERRAL
SHGAHIVVGTPGRLRDHLERGALDLSAIRTVVLDEADEMLDMGFREDLEEILDGAPEGRR
TLLFSATMPKPIVALARRYQKDALRISTVSDERGHGDISYQAVTVAPADIENAVVNLLRY
HEAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVAT
DVAARGIDLPNLSLVIHVEIPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLR
GAKIPVEWGTPPSREAIQEQDNARLREKLMERAELDEQDWALGAELLAEKSPKEIAAMLV
KSARAALPAPEELLDASEAPARRDGPRPGFEDTVWFRMDIGRNQNADPRWILPLICRRGH
VSRQEIGAIRIAANETMFEIPSAIAAKFVGAVKRTGQASDEGAEVAIEQIEGKPREMARE
NRRDGGPRGKGRPNEGHGPRPAYGARPFKGGPRKAGPRKPRG
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaacatctccccaccctcctgtccgacgcgctgacgcgaaagggctatgaa
agcctgaccccggtccaggccgaagtcacccaggcgcaagccaaaggccgcgacctcatc
gtctcggcgcagaccggatcgggcaagacggtcgccttcggcctcgccatggccgccgaa
ctgctgggcgaacagaaccgcctgcccgtcgccgcccagccgctggccctcgccatcgcg
ccgacccgcgaactggcgcttcaggtcgcgcgcgaactggaatggctctatggcgaggcg
cgcgcccgcatcaccacctgcgtcggcggcatggacgccgccaaggaacgccgcgcgctt
tcccacggcgcgcatatcgtcgtcggcacgccgggccgcctgcgcgaccatctcgaacgc
ggcgcgctcgacctgtcggcgatcaggacggtggtgctcgatgaagccgacgaaatgctc
gacatgggcttccgcgaggatctggaagaaatcctcgacggggcgcccgagggccgccgc
acgctccttttctccgccaccatgcccaagccgatcgtggcgctggccaggcgctaccag
aaggacgcgctgcgcatctccaccgtcagcgacgagcgcggccatggcgacatcagctat
caggccgtcaccgtcgcccccgccgacatcgaaaacgcggtggtcaacctgctgcgctat
catgaggcggaaacggcgatcctcttctgcgccacccgcgacaatgtccgccacctccac
gccagcctgacggagcgcggcttcgcggcggtggcgctgtcgggcgagcacagccagaat
gagcgcaaccacgcgctgcaggccctgcgcgaccgccgcgcgcgggtctgcgtcgcgacc
gacgtcgcggcgcgcggcatcgacctccccaatctcagcctcgtcatccatgtcgaaatc
ccgcgcgacgcggaaacgatgcagcatcgctccggccgcaccggccgcgccggcaagaag
gggacggccgtgctgatcgtcccctatccgcgccgccgccgggtcgaatccatgctgcgc
ggcgcgaagattcccgtcgaatggggcaccccgcccagccgggaagcgatccaggaacag
gacaatgcccgcctgcgcgagaagctgatggaacgcgccgagctggacgagcaggactgg
gcgctgggcgccgaactgctggccgaaaaatcgcccaaggaaatcgccgccatgctggtg
aagagcgcccgcgccgcccttcccgcgccggaggagctgctggacgccagcgaagcgccc
gcccgccgcgacggaccgcgtccggggtttgaggatacggtctggttccgcatggacatc
ggccgcaaccagaatgccgatccgcgctggatattgccgctcatctgccgccgcggccat
gtgtcgcggcaggaaatcggcgcgatccgcatcgccgccaatgaaacgatgttcgaaatc
ccttccgccatcgcggcgaagttcgtcggcgcagtaaagcgcaccggccaggccagcgac
gagggcgccgaagtcgcgatcgagcagatcgagggcaagccccgcgaaatggcgcgcgaa
aaccggcgcgacggcggcccgcgcggcaagggtcgccccaatgaagggcacggccccagg
cccgcctatggcgcgcggccgttcaagggcggcccgcgcaaggctggcccccgcaagccc
cgcggttga
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