KEGG   Sphingobium fuliginis ATCC 27551: FIL70_09960
Entry
FIL70_09960       CDS       T06343                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sufl  Sphingobium fuliginis ATCC 27551
Pathway
sufl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sufl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FIL70_09960 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sufl03400]
    FIL70_09960 (ligD)
Enzymes [BR:sufl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FIL70_09960 (ligD)
DNA repair and recombination proteins [BR:sufl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FIL70_09960 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QDC37494
UniProt: A0A5B8CD93
LinkDB
Position
cSF1:complement(2085340..2087835)
AA seq 831 aa
MADADPLSTYNRKRDFTRTREPAGKRGRSHGNGNGFIVQKHDATRLHYDFRLEMDGVLKS
WAVTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSA
SDIEKGHLHFILHGQRMRGEWLLIRLKPRGREKGENWLLRKIEDAHAGSADELTARELTS
IRSGRTMAEIAAGTPPMSLKGKRGKAFDAAMAQADRAVPAKRRARAGSDRMPAFQPPQLA
TLVDAVPTGNGWMHEIKYDGYRCLVSVSGGKVKIFTRSGLDWTDRFAPLPAEIGAMNLPA
ALIDGEIVAPGSDGNPDFSTLQQVLKGEGKAALHLFAFDLLHLDGQDLTAMPNIGRKEKL
AGLLGEGSAHVHVGDHVVGAGEKLFHAMCGAGQEGIISKRADAAYRGARTKNWLKVKCTR
RQEFVIVGWTPSSASGRSIRNLLLGQREGDGLVYAGKVGTGFNAANSAGLIAALGKRGRK
AAALSVPRSESKGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAASDVRREEAMP
TPEAHSSIRISNPDRLIFPEAKITKGELADYYARMGAAMLPWIARRPISLVRCPQGRAKK
CFFQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSEGLLACVQMGAIEFHGWGSSVADV
ERPDRMIFDLDPDEGLDFEDVKKAARDIRRALEDLGLTSFAMLSGGKGIHVVVPLTPQAQ
WPEVKDFADRFAHALAAQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRAREP
ASVAAPVTWEELDGIDSAAHFTVKDAAVLLDRASSRNLRGWGEAHQPLPAH
NT seq 2496 nt   +upstreamnt  +downstreamnt
atggccgatgccgatccgctcagcacctataaccgcaagcgcgatttcacccgcacccgc
gagccggcgggcaagcgcggacgcagccacggcaatggcaacggtttcatcgtgcagaag
cacgatgcgacccgcctgcattacgacttccgcctggaaatggatggcgtgctcaagagc
tgggcagtgacgcgcggccccagcatcgatcccgcggacaagcggctggccgtccgcacg
gaggatcatccgctgtcctatgcgacgttcgaggggaccattcccaagggggaatatggc
ggcggcaccgtgatgctctgggacgagggcacatgggaacccgttccgggcaagagcgcg
agcgacatcgaaaaagggcatctccatttcatcctgcacgggcagcggatgcggggcgaa
tggctgctgatccggctgaagccgcggggcagggaaaagggagaaaactggctgctgcgc
aagatcgaggatgcccatgccggcagcgcggacgaactgaccgcgcgcgagctgacgagc
atcaggagcggtcgcaccatggcggaaatcgccgccggcacgccgcccatgtcgctgaag
gggaagaggggaaaagccttcgacgcggcgatggcgcaggccgaccgcgccgtcccggcg
aaaaggcgcgccagggcagggtcggaccgcatgccggccttccagccgccgcaactggcg
acgctggtcgatgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggc
tatcgctgtctggtttccgtatcgggcgggaaggtcaagatctttacgcggtcgggcctc
gactggacggaccggtttgcgccgttgccggcggaaatcggggcgatgaacctgcccgcc
gccctgatcgatggcgaaatcgtcgcccccggcagcgatgggaatccggatttctccacg
cttcagcaggtgttgaagggagagggaaaggcggcgctgcacctgttcgccttcgacctg
ctgcatctggacgggcaggatctgaccgccatgcccaatatcggccgcaaggaaaagctg
gccggcctgttgggggagggttccgcccatgtccatgtcggcgatcacgtcgtcggcgcc
ggggaaaagctgttccacgccatgtgcggcgcagggcaggaggggattatttccaagcgc
gccgacgccgcctatcgcggtgcgcgcacgaagaactggctgaaggtcaaatgcacccgc
cgtcaggaattcgtcatcgtcggctggacccccagcagcgccagcggccggtccatccgc
aacctgctgcttggccaacgggaaggggatggcctggtctatgcgggaaaggtcggcacg
ggcttcaacgcggccaacagcgccggactgatcgccgccctgggcaagcgcgggcgcaag
gccgccgcgctcagcgtgccgcgcagcgaaagcaaaggcgcccaatgggttcgccccgat
ctggtcgctgaaatcgcctttgccgaattcacggcggagaatatcgtccgccatgccagc
ttccttggcctgcgcgaggacaaggcagccagcgacgttcgacgcgaggaagccatgccg
acgcccgaagcccatagctcgatccggatcagcaatcccgaccggctgatctttccggag
gcgaagatcaccaagggcgagctggccgattattacgcccgcatgggcgcggcgatgctg
ccctggatcgcccgccggccgatcagcctggtccgctgtccgcagggccgggcgaagaaa
tgcttcttccagaagcatgacagcggcagcttcggcgatcatgtcaaacatgtcccgatc
cgcgagaaggaagggaatgaggaggattatctctatatcgaggatagcgagggattattg
gcctgcgtccagatgggcgcgatcgaatttcatggctgggggtccagtgtcgcggatgtc
gagcggccagatcgcatgatcttcgacctcgatcccgacgaagggctggacttcgaggat
gtgaagaaggccgcgcgggacatccggcgggcgctggaggatctgggcctcaccagcttc
gccatgctgtccggcggcaagggcatccacgtcgtcgtgccgttgacgccgcaggcgcaa
tggccggaggtcaaggatttcgcggaccgcttcgcccacgccctcgccgcccaggaaccg
gaccgcttcaccgcgacgatgagcaaggcgaagcgcaagggccgcatcttcatcgactgg
ctgcgcaaccagcgcggcgcgacggctgtgctgccctatgtggtgcgcgcccgcgagccg
gcttccgtcgccgcccccgtcacctgggaagagctggacgggatcgacagcgccgcgcac
ttcacggtgaaggatgccgccgtcctgctggaccgcgcctcttcgcggaacctgcgcggc
tggggcgaggcgcatcagccgctgccggcgcattag

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