Sphingobium fuliginis ATCC 27551: FIL70_09960
Help
Entry
FIL70_09960 CDS
T06343
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sufl
Sphingobium fuliginis ATCC 27551
Pathway
sufl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sufl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FIL70_09960 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sufl03400
]
FIL70_09960 (ligD)
Enzymes [BR:
sufl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FIL70_09960 (ligD)
DNA repair and recombination proteins [BR:
sufl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FIL70_09960 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QDC37494
UniProt:
A0A5B8CD93
LinkDB
All DBs
Position
cSF1:complement(2085340..2087835)
Genome browser
AA seq
831 aa
AA seq
DB search
MADADPLSTYNRKRDFTRTREPAGKRGRSHGNGNGFIVQKHDATRLHYDFRLEMDGVLKS
WAVTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSA
SDIEKGHLHFILHGQRMRGEWLLIRLKPRGREKGENWLLRKIEDAHAGSADELTARELTS
IRSGRTMAEIAAGTPPMSLKGKRGKAFDAAMAQADRAVPAKRRARAGSDRMPAFQPPQLA
TLVDAVPTGNGWMHEIKYDGYRCLVSVSGGKVKIFTRSGLDWTDRFAPLPAEIGAMNLPA
ALIDGEIVAPGSDGNPDFSTLQQVLKGEGKAALHLFAFDLLHLDGQDLTAMPNIGRKEKL
AGLLGEGSAHVHVGDHVVGAGEKLFHAMCGAGQEGIISKRADAAYRGARTKNWLKVKCTR
RQEFVIVGWTPSSASGRSIRNLLLGQREGDGLVYAGKVGTGFNAANSAGLIAALGKRGRK
AAALSVPRSESKGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAASDVRREEAMP
TPEAHSSIRISNPDRLIFPEAKITKGELADYYARMGAAMLPWIARRPISLVRCPQGRAKK
CFFQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSEGLLACVQMGAIEFHGWGSSVADV
ERPDRMIFDLDPDEGLDFEDVKKAARDIRRALEDLGLTSFAMLSGGKGIHVVVPLTPQAQ
WPEVKDFADRFAHALAAQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRAREP
ASVAAPVTWEELDGIDSAAHFTVKDAAVLLDRASSRNLRGWGEAHQPLPAH
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgccgatccgctcagcacctataaccgcaagcgcgatttcacccgcacccgc
gagccggcgggcaagcgcggacgcagccacggcaatggcaacggtttcatcgtgcagaag
cacgatgcgacccgcctgcattacgacttccgcctggaaatggatggcgtgctcaagagc
tgggcagtgacgcgcggccccagcatcgatcccgcggacaagcggctggccgtccgcacg
gaggatcatccgctgtcctatgcgacgttcgaggggaccattcccaagggggaatatggc
ggcggcaccgtgatgctctgggacgagggcacatgggaacccgttccgggcaagagcgcg
agcgacatcgaaaaagggcatctccatttcatcctgcacgggcagcggatgcggggcgaa
tggctgctgatccggctgaagccgcggggcagggaaaagggagaaaactggctgctgcgc
aagatcgaggatgcccatgccggcagcgcggacgaactgaccgcgcgcgagctgacgagc
atcaggagcggtcgcaccatggcggaaatcgccgccggcacgccgcccatgtcgctgaag
gggaagaggggaaaagccttcgacgcggcgatggcgcaggccgaccgcgccgtcccggcg
aaaaggcgcgccagggcagggtcggaccgcatgccggccttccagccgccgcaactggcg
acgctggtcgatgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggc
tatcgctgtctggtttccgtatcgggcgggaaggtcaagatctttacgcggtcgggcctc
gactggacggaccggtttgcgccgttgccggcggaaatcggggcgatgaacctgcccgcc
gccctgatcgatggcgaaatcgtcgcccccggcagcgatgggaatccggatttctccacg
cttcagcaggtgttgaagggagagggaaaggcggcgctgcacctgttcgccttcgacctg
ctgcatctggacgggcaggatctgaccgccatgcccaatatcggccgcaaggaaaagctg
gccggcctgttgggggagggttccgcccatgtccatgtcggcgatcacgtcgtcggcgcc
ggggaaaagctgttccacgccatgtgcggcgcagggcaggaggggattatttccaagcgc
gccgacgccgcctatcgcggtgcgcgcacgaagaactggctgaaggtcaaatgcacccgc
cgtcaggaattcgtcatcgtcggctggacccccagcagcgccagcggccggtccatccgc
aacctgctgcttggccaacgggaaggggatggcctggtctatgcgggaaaggtcggcacg
ggcttcaacgcggccaacagcgccggactgatcgccgccctgggcaagcgcgggcgcaag
gccgccgcgctcagcgtgccgcgcagcgaaagcaaaggcgcccaatgggttcgccccgat
ctggtcgctgaaatcgcctttgccgaattcacggcggagaatatcgtccgccatgccagc
ttccttggcctgcgcgaggacaaggcagccagcgacgttcgacgcgaggaagccatgccg
acgcccgaagcccatagctcgatccggatcagcaatcccgaccggctgatctttccggag
gcgaagatcaccaagggcgagctggccgattattacgcccgcatgggcgcggcgatgctg
ccctggatcgcccgccggccgatcagcctggtccgctgtccgcagggccgggcgaagaaa
tgcttcttccagaagcatgacagcggcagcttcggcgatcatgtcaaacatgtcccgatc
cgcgagaaggaagggaatgaggaggattatctctatatcgaggatagcgagggattattg
gcctgcgtccagatgggcgcgatcgaatttcatggctgggggtccagtgtcgcggatgtc
gagcggccagatcgcatgatcttcgacctcgatcccgacgaagggctggacttcgaggat
gtgaagaaggccgcgcgggacatccggcgggcgctggaggatctgggcctcaccagcttc
gccatgctgtccggcggcaagggcatccacgtcgtcgtgccgttgacgccgcaggcgcaa
tggccggaggtcaaggatttcgcggaccgcttcgcccacgccctcgccgcccaggaaccg
gaccgcttcaccgcgacgatgagcaaggcgaagcgcaagggccgcatcttcatcgactgg
ctgcgcaaccagcgcggcgcgacggctgtgctgccctatgtggtgcgcgcccgcgagccg
gcttccgtcgccgcccccgtcacctgggaagagctggacgggatcgacagcgccgcgcac
ttcacggtgaaggatgccgccgtcctgctggaccgcgcctcttcgcggaacctgcgcggc
tggggcgaggcgcatcagccgctgccggcgcattag
DBGET
integrated database retrieval system